Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi620g00021 ATGTCAGAAATGCAATTTGCTGAAAATGTTGGGGATAGCAGAAAGCTGAAGCGCAAGATTGAGGAGCCACCTAACTCTGATGCTGCAAACTCAGAGCCATTGCTAACTCTGAGTTTGGGTAGTAACAGAGTTGTAGGTGGATCCTCATCCAAGTTCCCAACATTCAAACCCAATGATGAAGAAGTGATAGCCATGAGAGAATTCCCTTGCAAATATTGCAACAAAAAGTTCCCAAGTTCTCAAGCTCTGGGTGGACACCAAAACGCTCACAGGCGTGAAAGGGTGCTCTCACGGTTAGACAAGGAATTTAATTTGGGCACTTTTGGGCTTGGTGTTCATCACCTTTGTCCTTACTCTATGATGGCAAATCACCAATACCCTTTTAATGGGCCACCCTTTTATCATGCAACCCACATGAACCATCCCATTCCCATGGCTCATCCTCACATGCCATGGGCTCATTTTGGGCCTGGCTATGTCAACCAATTTGGGATGACCAACTCTGGGGGTGCAAGTGCTCAAATTGCACAGAATTTGTACCCCAACGATGTGGGATTTGGTTATGAACTTGATCAGGTTTCTCCACGTGCTGTTGGAGATGCAACTAATAGAGTTCCCATGCCTCCAGCTGGTCTTGGCACCCTTATGGGAAATCAATATGTTGGGAACCAGCAATTTTCATCCTCAGTGCCTGATTTATCCCTTAGCCTTTAA 714 0.4552 MSEMQFAENVGDSRKLKRKIEEPPNSDAANSEPLLTLSLGSNRVVGGSSSKFPTFKPNDEEVIAMREFPCKYCNKKFPSSQALGGHQNAHRRERVLSRLDKEFNLGTFGLGVHHLCPYSMMANHQYPFNGPPFYHATHMNHPIPMAHPHMPWAHFGPGYVNQFGMTNSGGASAQIAQNLYPNDVGFGYELDQVSPRAVGDATNRVPMPPAGLGTLMGNQYVGNQQFSSSVPDLSLSL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi620g00021 237 Pfam C2H2-type zinc finger 68 93 - -
Sebi620g00021 237 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Sebi620g00021 237 MobiDBLite consensus disorder prediction 1 34 - -
Sebi620g00021 237 Gene3D Classic Zinc Finger 58 104 - -
Sebi620g00021 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Sebi620g00021 237 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 53 146 IPR044246 GO:0009788
Sebi620g00021 237 SUPERFAMILY beta-beta-alpha zinc fingers 66 95 IPR036236 -
Sebi620g00021 237 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi620g00021 Sebi-Chr620 344361 345074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi620g00021 60 98 C2H2 Transcription Factor Family AT1G80730 61.538 1.08e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi620g00021 zf-C2H2_6 3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi620g00021 - - aprc:113874385 208.764