Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi61g00065 ATGGAGGATCCAGCTTCCTTTCATCAATACCCTCCAATGGATTCCTTTGTATTCCAGCTTGATGATCTTGATTTTGACTCATTCTCCGAGTCCCTAGAGAGCTATTCCTCTCAGAAGCGCTTCAATTCAGAAAGCACACAAAACTCTTTCCCCGTTGAAAGTCCTGAATATCAATCTGTTGCCCCTGCTACAAGACCAACCAAACAGCTCAAGACTGAGAGTACCAACACCTGGACTAGTACTACTACTACTTATGGCACTCACTTGAAGGCGCCCAACAAGGCTTCTCCTAATCCATCCTCAAAAATAATTTCTTTTGAGAATTGCAATGTTGCTTCCCAACAATTCTACAAAATGGATCCCAATGTGAAGCCAAAAACCGAGACAGGGTATGGTGAAAACTTGGATTTTACAGCTGCTATTTCTCAAGGTGCTTTAAACTATGATAAACTAGAAAACAAAGCTACCACTACAACAGCTAGAAACTCTGTTCAAGCTCGAGACCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTTAGTCAGAGATTCATTGCTCTTTCTGCTATCCTTCCTGGACTCAAAAAGATGGATAAGGCTTCTGTGTTGGAAGATGCTATCAAGTATGTGAAACAACTACAGGAACAGGTGAAGAATCTGGAGGAAAAAGTAACAGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAGATCAATTCTGTTCTCAGATGATGATAGCTCTTCTTCAGATGAAAACTCTGACCAACAGTTACTCCCTGAAATCGAAGCAAGAGTTTCAGGGAAAGATGTACTCATCAGAATCCACTGTGACAAACACAGTGGACGAGCATCGCTTGCATTACTCAGTGAATTAGAAAAGAATAATCTCACAGTTCAGAGTAGCAGCGTTTTGCCTTTTGGGAATAACGCTCTTGACATAACCATTGTTGCTCAGATGAACAAGGAATACAACTTGAAAACAAAGGATCTCATAAGAAGGTTAAGTCAAGCTTTGAGGCAGCTCATTTGA 1029 0.4052 MEDPASFHQYPPMDSFVFQLDDLDFDSFSESLESYSSQKRFNSESTQNSFPVESPEYQSVAPATRPTKQLKTESTNTWTSTTTTYGTHLKAPNKASPNPSSKIISFENCNVASQQFYKMDPNVKPKTETGYGENLDFTAAISQGALNYDKLENKATTTTARNSVQARDHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLEDAIKYVKQLQEQVKNLEEKVTDKTVESAVFVKRSILFSDDDSSSSDENSDQQLLPEIEARVSGKDVLIRIHCDKHSGRASLALLSELEKNNLTVQSSSVLPFGNNALDITIVAQMNKEYNLKTKDLIRRLSQALRQLI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi61g00065 342 Pfam Helix-loop-helix DNA-binding domain 168 214 IPR011598 GO:0046983
Sebi61g00065 342 Coils Coil 203 230 - -
Sebi61g00065 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 230 IPR036638 GO:0046983
Sebi61g00065 342 PANTHER BHLH TRANSCRIPTION FACTOR 15 340 - -
Sebi61g00065 342 CDD bHLH_AtNAI1_like 166 238 - -
Sebi61g00065 342 MobiDBLite consensus disorder prediction 36 99 - -
Sebi61g00065 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Sebi61g00065 342 SMART finulus 170 219 IPR011598 GO:0046983
Sebi61g00065 342 Gene3D - 163 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi61g00065 Sebi-Chr61 2116018 2117241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi61g00065 83 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.741 3.27e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi61g00065 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi61g00065 - - gmx:100798011 360.533