Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi61g00045 ATGCCAGTTCCACTTGCTCCCTACCCGACACCACCTGCTCCTGCTCCATACACACCACCAACAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGCCATACTCTACTCATGTACATCCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGATTCCTTTAATTGTCTTGAGTCCCTACATTGTTGTGAAGAATCCCTTCAGAAAAGGTCCAAGTACGGCCACAAGGCAGCTAAATCGGCATCTGATGTCAAAGCATATATCGAGAAAGACGGTGAACTCATTGATTTTGGAGTATTCCAAATCGATGGTAGATCCAGTAGAGGAGGTAAACAAAACCTCGCTGACATATACGCGGAAGCACTAAACGCTGATTGTAAATCAAAAGGTCCTACCGAGATCCGACTGATATACCCAAATGCTTTGATTGGTACTGGAATGGAAAGGCAACCAGTTGCGCACTTACACTTACATACCAAGACGTATGACCTCTGTATAACATCCTCAATCCATGTGCCTACTGCCTACTCCTACCACATATGTCATCACCGAGCTAATAAGGGCATGAGAATTCATAGAATCTTCTTTGTTCTTAGAACACCACATGACCTACTAGCCCCTGCTACTAACTGGGTGATGGGATTTCTCCCACCTACCTCATGGGGATGA 810 0.463 MPVPLAPYPTPPAPAPYTPPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDSFNCLESLHCCEESLQKRSKYGHKAAKSASDVKAYIEKDGELIDFGVFQIDGRSSRGGKQNLADIYAEALNADCKSKGPTEIRLIYPNALIGTGMERQPVAHLHLHTKTYDLCITSSIHVPTAYSYHICHHRANKGMRIHRIFFVLRTPHDLLAPATNWVMGFLPPTSWG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi61g00045 269 PANTHER PROTEIN LSD1 18 57 IPR040319 -
Sebi61g00045 269 Pfam LSD1 zinc finger 30 54 IPR005735 -
Sebi61g00045 269 Pfam LSD1 zinc finger 69 93 IPR005735 -
Sebi61g00045 269 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Sebi61g00045 269 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Sebi61g00045 269 SUPERFAMILY Origin of replication-binding domain, RBD-like 123 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi61g00045 Sebi-Chr61 1165669 1171156 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Sebi61g00045 Gemini_AL1 0.00014 CL0169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi61g00045 - - qsu:112000975 179.104