Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi61g00022 ATGACATGCCAGTGTTCTGCATTTCTGCTAAGTAAGCTATTTGGAAACTTTTCACCATTTAAAAAGAAGGAATTGGATGTTGGTGAAGCAGTTTTGATCTGTTCTGTTACTTTCTTTGGGAGACTGAGAAACGATGCCAAGCCAGCTATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCAAAGGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGCACTTCTGCTGCCGAGATAAAAGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAGGCCTTGTCAGCAATCTCAAGTAGACCTGAATGCTTCCACATTGCCATAGTGGAGGTGAGCTCAAGCAATTCCCAGGGAGGTTTCAAATTTCTTGAAAATGCTAAGGATTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCCGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTTGTTCACAAGGCTTTCAATGCTGGGGCAAGTTCCCAGTCTGAATCACTAAAACCTGTCAAAGAATCTGTGGTGTCCATGTTGCAGCTCCAAACAGACAACATGCAACATGAAAATGAAGTCTCAAATGATGAAGAGAAAGTATCTGGGTTTATTGACAATGACCATGAGCAGTATCCAGCTCCTTCAACCCCACAATTGAAACAAGGGGCAAGATTACTCCATGATGGGGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGCGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAACAGAGGAAATCTGAATCTGAATCTGAAATGACTCTGGTTAAGGTGGAAGAGGATTTTGGAGATGCTTCTAAGGGTGATAGTGCAGTTTCTCAGCATCCACAAAATAAAAAGGTTCTCAGCAACGCTGACAGTAACACAGCATGTCCAAATAAAGTGCGTGTCCATAGTGATAAATGTGAGATAAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACATCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGGCAAATCTTGCCCAAGGAAGATGATCGAAAATGGCTAAATCAAAGAGATCCAATGCACAGGAGCTATTGTCATCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCACACCCTTCCTCCACCTCCTGTATATCCTGTGTGGGGACAATCTGGTGGCCAAATGGCTGGCATGCAGATTTGGAGCCCTCCTGGTTATCCCTTGTGGCAGCCTACAGAAAATGCATGGGGCTGCCCTGTGTTACCACCTCCTCAAGCTCCTTGCTTTTCCTACGCTCAGAATGTACCTGCGATACATGATGCTAATGCAATGGATTACACATTTAGCATGCCACATAGTTCCTTTGAGCAGTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTACCCTTGGGCCTCAAACCACCTTCCACAGATAGTGTGTTGGCTGAGCTTTCCAGGCAAGGAATTTCCAGCATCCCTCCTAGAAGCTGTTCTAATCTGAGTTGA 1779 0.4356 MTCQCSAFLLSKLFGNFSPFKKKELDVGEAVLICSVTFFGRLRNDAKPAMVCTANDLQEWKDFPKGLKVLLLEGDSTSAAEIKAKLEAMDYNVSTFCDENEALSAISSRPECFHIAIVEVSSSNSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASSQSESLKPVKESVVSMLQLQTDNMQHENEVSNDEEKVSGFIDNDHEQYPAPSTPQLKQGARLLHDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQQRKSESESEMTLVKVEEDFGDASKGDSAVSQHPQNKKVLSNADSNTACPNKVRVHSDKCEIKANRKKMKVDWTSELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEDDRKWLNQRDPMHRSYCHQRPIMAFPPYHSNHTLPPPPVYPVWGQSGGQMAGMQIWSPPGYPLWQPTENAWGCPVLPPPQAPCFSYAQNVPAIHDANAMDYTFSMPHSSFEQYPAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPRSCSNLS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi61g00022 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 419 IPR017930 -
Sebi61g00022 592 ProSiteProfiles Response regulatory domain profile. 68 181 IPR001789 GO:0000160
Sebi61g00022 592 MobiDBLite consensus disorder prediction 280 295 - -
Sebi61g00022 592 Coils Coil 206 226 - -
Sebi61g00022 592 Pfam Response regulator receiver domain 69 176 IPR001789 GO:0000160
Sebi61g00022 592 Gene3D - 67 197 - -
Sebi61g00022 592 PANTHER TRANSCRIPTION ACTIVATOR GLK1 50 588 IPR044825 GO:0003700|GO:0045893
Sebi61g00022 592 MobiDBLite consensus disorder prediction 296 319 - -
Sebi61g00022 592 SUPERFAMILY Homeodomain-like 362 420 IPR009057 -
Sebi61g00022 592 FunFam Two-component response regulator 359 422 - -
Sebi61g00022 592 Pfam Myb-like DNA-binding domain 366 415 IPR001005 -
Sebi61g00022 592 SMART REC_2 67 177 IPR001789 GO:0000160
Sebi61g00022 592 SUPERFAMILY CheY-like 65 183 IPR011006 -
Sebi61g00022 592 Gene3D - 359 421 - -
Sebi61g00022 592 MobiDBLite consensus disorder prediction 261 340 - -
Sebi61g00022 592 NCBIfam myb-like DNA-binding domain, SHAQKYF class 363 418 IPR006447 GO:0003677
Sebi61g00022 592 MobiDBLite consensus disorder prediction 323 340 - -
Sebi61g00022 592 FunFam Two-component response regulator-like APRR2 66 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi61g00022 Sebi-Chr61 564421 569431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi61g00022 50 588 Response Regulator Gene Family AT4G18020 51.478 3.01e-147 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi61g00022 Response_reg 2.1e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi61g00022 - - gmx:100777535 868.611