Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi618g00012 ATGGATGACGATTACGACAGCGGTGGCCGGAGCGCCGACAAGGCCCCTGCCGCCGAAGACGAAGGAAGCACGGCTCCCCTTCCCGAAAAGGTACAGGTAGGTGGTTCCCCGTTGTACAGAGTAGAGAGGAAACTTGGGAAGGGAGGGTTTGGACAAGTCTACGTTGGTCGGCGCGTTGGTGCCGGAGCCGGAGCCTTAGAGGTAGCTTTGAAATTTGAGCATAAAAGTAGTAAGGGATGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAATGCATTAGGTGGTAGTCATGGAGTTCCACGAGTTCATTACAAGGGACGGCAAGCAGATTACTATGTTATGGTCATGGATATGCTGGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCAGCAGAGATGGTGGCATGTATAGCAATTGAGGCTATATCCATATTAGAGAAAATGCATTCTAGAGGATACGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGCACCCCGGGAACTCATGATGAGAAAAAGCTTTTTCTTGTTGATCTTGGGTTAGCAACCCGTTGGCGTGATAATTCAACCGGCCTTCATGTTGAGTATGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAAGTAGCAGGAGAGATGATTTGGAATCTCTCGCGTACACACTAATCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATTCCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAAATGGCCACCTCCCCTGAAAATTTGTGTAGCTATTGTCCTCCACCTTTTCGGCAGTTTGTTGAGTGCGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCACTTTTTGATGGAATTGTTAGTCCAAATCCAGACATTAGACCCATAAATACTGATGGTGCACAGAAGCTTATATATCAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAAGATGATGATGAGCAACCAAAAAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCTCGCCGACCAATGAAGCAAAGGTACCATTACAATGTCGCTGATGTGCGGCTGTCTCAACACATTGAGAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTTATCATGGACGCTGGCACTGGTTTCACTGCACAAGTTTACGAACTCTCATCCTGCTTTCTTCACAAGGAATGGATTATGGAACAATGGGAAAAGAATTATTACATTAGTGCCATAGCAGGAGCTACTAATGGGAGCTCATTGGTTGTAATGTCCAGAGGGACCCAATACTTGCAGCAGTCCTATAAGGTCAGTGATTCATTTCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTATGTGACTGCTATGGCTACTGCTGGAAGTAAATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGAAAATGGTTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTTGTTCTTAGTATTCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCCGAACATCTGCCTTTCCTAGTACTCATGTCAAGGACAAATGGGCAAAGAACCTCTATATTGCATCTATTTGCTATGGGAGAACAGTTTCATGA 1800 0.4428 MDDDYDSGGRSADKAPAAEDEGSTAPLPEKVQVGGSPLYRVERKLGKGGFGQVYVGRRVGAGAGALEVALKFEHKSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQADYYVMVMDMLGPSLWDVWNNNSHTMSAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTHDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMATSPENLCSYCPPPFRQFVECVVNLKFDEEPNYAKYISLFDGIVSPNPDIRPINTDGAQKLIYQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWEKNYYISAIAGATNGSSLVVMSRGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSKWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWENGYRITSTAATWDQAAFVLSIPRRKPADETQETLRTSAFPSTHVKDKWAKNLYIASICYGRTVS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi618g00012 599 Pfam Protein kinase domain 39 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi618g00012 599 CDD STKc_CK1 39 308 - -
Sebi618g00012 599 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
Sebi618g00012 599 SMART serkin_6 39 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi618g00012 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Sebi618g00012 599 MobiDBLite consensus disorder prediction 1 33 - -
Sebi618g00012 599 Gene3D Transferase(Phosphotransferase) domain 1 9 360 - -
Sebi618g00012 599 FunFam casein kinase 1-like protein HD16 12 355 - -
Sebi618g00012 599 ProSiteProfiles Protein kinase domain profile. 39 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi618g00012 599 SUPERFAMILY Protein kinase-like (PK-like) 39 316 IPR011009 -
Sebi618g00012 599 PANTHER CASEIN KINASE-RELATED 39 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi618g00012 Sebi-Chr618 461536 465872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi618g00012 2 266 AGC Kinase Gene Family AT3G08730 22.846 3.57e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi618g00012 Pkinase 3.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi618g00012 - - nnu:104592067 1144.03