Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi616g00033 ATGGATAGTAGTAGTAGTGGGTGGAAGGCTAATGTTGAGATATCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTATTTTTGCAAAGGATGCAGAAGGTACTGGACCAAAGGTGGATCTCTCCGCAATGTCCCTGTTGGTGGTGGCTGCAGGAAAAATAGAAGAGGTAATCATAATAAGACCTTAAGACAATCCATTGATGGTCTCACTTTCAAAAATTCACCTTGTGCTGATGCTACAAATCATCATAACCCCTCAATTGCCCATCCTACTAGGAAGACTAGTAGTACTAATTCCTCCTCTGATGGACCCAATATTGATCTTGCACTTGTTTATGCAAATTTCCTAAATCAAAAGCCAGAGTCTGGAACAGGGGTGGTTGAGAATCAAGATCAGGTTCAAAATGTTTTTGATCCTTCTCTGGAAAATTCTAATACAGAGCAGGTTGGTCCAAGTACTTTGCCACAAGAACTTGGTCTTACTGGGTGTTTGTTGAATCTTCCTGAACAACAACCTTCCACAGAGTCCAATTTTAGTGAGGGTAACAACCAAATGTACTATAGCGAGTTCAACTCTATGCAGAGCCTTCAAAAAGATAGGATTGAGCAATGTAGTAATTTTGAGCTGCCACCTTTGCCAGGTGAAGAGGAAACCTCACATGATCATGTGATGTGGTCAAATTCTGAGATGATGATAAATCACCATCCATTTCATCAAGTCAGCCAAGCGCCAATTGTTGGAGGTGAAGTTCATGATGATGCAGACTTGTTAATCGGTAATTGGAGCCCCTTTGATTTGCCAAGGGATGCTTCTTTTTCCAGACCATGA 873 0.4147 MDSSSSGWKANVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNHNKTLRQSIDGLTFKNSPCADATNHHNPSIAHPTRKTSSTNSSSDGPNIDLALVYANFLNQKPESGTGVVENQDQVQNVFDPSLENSNTEQVGPSTLPQELGLTGCLLNLPEQQPSTESNFSEGNNQMYYSEFNSMQSLQKDRIEQCSNFELPPLPGEEETSHDHVMWSNSEMMINHHPFHQVSQAPIVGGEVHDDADLLIGNWSPFDLPRDASFSRP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi616g00033 290 ProSitePatterns Zinc finger Dof-type signature. 18 54 IPR003851 GO:0003677|GO:0006355
Sebi616g00033 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 197 IPR045174 GO:0003700|GO:0006355
Sebi616g00033 290 Pfam Dof domain, zinc finger 17 70 IPR003851 GO:0003677|GO:0006355
Sebi616g00033 290 ProSiteProfiles Zinc finger Dof-type profile. 16 70 IPR003851 GO:0003677|GO:0006355
Sebi616g00033 290 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi616g00033 Sebi-Chr616 538557 539429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi616g00033 3 285 C2C2-Dof Transcription Factor Family AT3G52440 40.468 1.58e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi616g00033 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi616g00033 - - gmx:100794208 417.927