Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi616g00032 ATGGATAATGAGATTGATGTTCCTCCATTCTTTCTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAGTCACTGTCTCCACAGGCATCACCTATGACAGAGAGAGCATTGAAAAATGGCTCTTTTCAGGAAAAAACAACACATGTCCTGTTACCAAACAACCCCTTCTCTCTGATTCCACTGATCTCATAACCCCTAATCACACCCTTCGCAGACTCATTCAAGCTTGGTGCACCATCAACGCTTCTCATGGCATCGAAAGGATTCCAACTCCTAAGCCTCCAGTAACAAAATCAATGATTGAAAAGCTTCTCAAAGATGCTTCTACTTCCTCTCAATTGCAGATGCAATGCCTCAGAAGCCTTAAAACCATTGCTTCTGAGAGTGAAACTAACAGAAGGTGCATTGAATCTGCTGGTGCTGTTGAGTTCTTAGCATCAGTTGTAACAACCAACACCAATTCTTCTTCTTCATCATCTTTAACAGAATTAGAGGGTTGCTCTGAGGATGAAGAAGGGTTTGATTTGAAATCAGGTGCTGGAGATGAAGCCTTAAGCATCCTCCGTGGTCTTCATTTATCAGAAGCTGGGTTGAAGACTCTCCTAGGCTTTAAAAATGGAGACTTTATTGACTCTTTAACAAAAATCATGCAGAGGGGAATCTATGATTCAAGAACTTATGCAGTTTTGTTGTTGAAATCTATGTCTGAAGTGGCAGATTCTGTGCAGATAGCAAATGTAAAAGCTGAGTTATTTGTGGAGTTAGTTCAAGTTCTTAAAGACCAGATTTCACAGAAGGCTTCAAAAGCAACACTTCAGGCACTGATTCAACTTGTTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGGGCAGTTCCTGTTTTGATAGAACTTCTTCTTGATTGTAAGGACAGAAAGCCTTGTGAAATGGTGATAGTTGTTTTGGAGATGTTGTGTCAGTGTGCTGATGGGCGTGCAGAGCTTTTGAGCCATGGAGCAGGGTTAGCCATAGTGTCAAAGAAGATTCTGAGGGTTTCTACCATGGCAAATGATAGAGCTGTGAGGATTCTGTTATCTGTTTCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAGATGCTGCAATTGGGTGTGGTGGCTAAGCTGTGTTTGGTGCTTCAAGTGGATAGTGGAAATAAGGCCAAGGAGAAAGCAAGAGAGATACTTAAATTGCATGCTCGAGCATGGAGGAATTCATCTTGCATACCTAGCAATTTGCTTGCTTCATACCCAACAAGTGTGTGA 1290 0.4217 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPVTKQPLLSDSTDLITPNHTLRRLIQAWCTINASHGIERIPTPKPPVTKSMIEKLLKDASTSSQLQMQCLRSLKTIASESETNRRCIESAGAVEFLASVVTTNTNSSSSSSLTELEGCSEDEEGFDLKSGAGDEALSILRGLHLSEAGLKTLLGFKNGDFIDSLTKIMQRGIYDSRTYAVLLLKSMSEVADSVQIANVKAELFVELVQVLKDQISQKASKATLQALIQLVPWGRNRIKAVEAGAVPVLIELLLDCKDRKPCEMVIVVLEMLCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVSRFSATPSVVQEMLQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSSCIPSNLLASYPTSV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi616g00032 429 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Sebi616g00032 429 Gene3D - 91 415 IPR011989 -
Sebi616g00032 429 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Sebi616g00032 429 SUPERFAMILY ARM repeat 100 412 IPR016024 -
Sebi616g00032 429 CDD RING-Ubox_PUB 8 59 IPR045210 -
Sebi616g00032 429 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Sebi616g00032 429 SUPERFAMILY RING/U-box 4 84 - -
Sebi616g00032 429 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Sebi616g00032 429 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Sebi616g00032 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi616g00032 Sebi-Chr616 529671 530960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi616g00032 1 426 U-box Gene Family AT3G52450 60.641 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi616g00032 - - gmx:100811258 620.542