Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi614g00004 ATGTGGAGCTCATCGTGCTTCAAGAAGAAAGGTCGATCTTCTCTCAAGAAGATTTCACCATCGCTCATTGCTGAGACCTGTGCATCCTCTTCTGCCGCTGTCACAGAGGTGTTTACTTCTTCTGCCGTTACAACTATTGTTCCCTCTGCAGAGGCATCCGCTTCTTCTCTGTCTTCGATTGCTCTATCCCCTGTTGTGAGCACTAGAATTGTTGAAGAAAAGCAAATTGAGGAAGGTGAAGGAGCGAGTACTGGTGGTTCTTTCTTGATTCCGTTTTTCTTACCTGAAATCAGTGAGGTCTCCACCACAAAATTGGAATGGAAATCGTCACCGGATCCGTTCATCTTTGGGAGCTTCGAATTAGTGAATCCTTTGGAGGAGGAGAAAGTTTCTCCGGCTTCACTCTCAGGCGAGGCATCGTCTTGTTTGTCGAACACCTCGAGCGAGACCTCCGCTAGCAAAGGCAAAGTTCTTAGTGTGAGAATGGATGATGTCGTCCGTTCGTCGAACCTGCACTTGAAGATGATCTCTCTCACTTGCGGTGATTTCTCCTCTTTCTCTCTCGGTGGTTACCTTCATGTTTTTGTTCATCGATCTCGCAAAGCCATGTATGGGAGGTGCGGTGCTCTCCATCACACACGCGACATGTTCGATGTTCAATGTCATCGAGGTATTCAAGAATTGGTTTCTTCAAATTCTATTGTGTCTGGTTATATGTGTGCCTCTGATGCAAATTCTGGCTATACACGCGCTCTATATGATCGTCAAAATCCTGTGTCAAATGTTGCACTTATGTTGTTTGATGAAATGACAAAATGTATATCCCCTAATGTTGTTAGCTCTGTTAACATACTTCTTGCTTGCGCTTCCCTAGTTGGAGACAGAGCAGGTGCATGGATTTTGGTCTATATGAATTTTCCAAATTACACTAGGCAATCTGGTTATCAGAAGAAGGAGTCTTCTTCTGTCATGAGCCCTCTCCTATCGAGTTCTGTTTTTGAACCATACTTGACATTATTGGTGCAAGAGATGTTTCTTGTGGCTGAATCTAATTCAAAATCTGTTTCTCAAAGTTTTGCTGAGGATAATGTTGTTTTGAAACTCAGTTTGTGGATTATGGATTTCAAATACACTGAGCAAGGTACTATTTTACATACTGGTATAATTGTTGCAATATTAAGGTGTCTTTCCATTAGCTCCCAGGTTACCAATGCATTCGAGTACATACTCAAGGCTGGTGCTCTTGGTGGATTCAATGTCCATGCTAACAATATCGTCACTACTGTCCACATAGCCACTGTTGAGGTTGTTGGTATTGTTAAAGGGGGAACACAATTCGCATCTCAATCAGGTTATCTTATTTTACCTGGTGTCAAGGGGGTTAGCAAAGAATCTCCGGCTGAGCAGTTTGTTAAATCTTTCGCTGATAAATATTTTGCTGCTGAGGCTGAGGATATACCCACATTATTAACCAGTATTGCTTATGGGATTTATATGGCAGTGTCTAGCAACCCTCAAGATGCTGCCAGAGCATTGGGTGTTCTGAACTTCACTCCTCTTAACAATAAGCCCATCCGTATTATGTATTCGCATCGTGATCCAAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATAAAGAATTTGGACAAGGCAATTGACCACAAGGCGTTACATGATACCTTTTCTACTTTTGGGAATATCCTTTCTTGCAAGGTTGCTACTGATGCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTCGATACTGAGGAGGCTGCTCAAAAGGCCATAGAGAAGCTGAATGGTATGCTATTGAATGATAAGCAAGTGTATGTGGGACCCTTCCCTCGCAAGCAAGACAGAGAGACTGCCATTGAAAGGGCAAAATTCAATGATGTTTTTGTAAAGAATCTATCAGAATCCACCACTGATGATGAATTAAAGAATATTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGAGATGGGAAGTCAAAGTGCTTTGGATTTGTCTCCATCCTCTTATACTAA 2052 0.4211 MWSSSCFKKKGRSSLKKISPSLIAETCASSSAAVTEVFTSSAVTTIVPSAEASASSLSSIALSPVVSTRIVEEKQIEEGEGASTGGSFLIPFFLPEISEVSTTKLEWKSSPDPFIFGSFELVNPLEEEKVSPASLSGEASSCLSNTSSETSASKGKVLSVRMDDVVRSSNLHLKMISLTCGDFSSFSLGGYLHVFVHRSRKAMYGRCGALHHTRDMFDVQCHRGIQELVSSNSIVSGYMCASDANSGYTRALYDRQNPVSNVALMLFDEMTKCISPNVVSSVNILLACASLVGDRAGAWILVYMNFPNYTRQSGYQKKESSSVMSPLLSSSVFEPYLTLLVQEMFLVAESNSKSVSQSFAEDNVVLKLSLWIMDFKYTEQGTILHTGIIVAILRCLSISSQVTNAFEYILKAGALGGFNVHANNIVTTVHIATVEVVGIVKGGTQFASQSGYLILPGVKGVSKESPAEQFVKSFADKYFAAEAEDIPTLLTSIAYGIYMAVSSNPQDAARALGVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDASGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFPRKQDRETAIERAKFNDVFVKNLSESTTDDELKNIFGEFGTITSAVVMRDGDGKSKCFGFVSILLY 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi614g00004 683 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 635 678 IPR000504 GO:0003723
Sebi614g00004 683 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 544 612 IPR000504 GO:0003723
Sebi614g00004 683 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 542 619 IPR000504 GO:0003723
Sebi614g00004 683 Gene3D - 503 614 IPR012677 -
Sebi614g00004 683 SMART rrm1_1 634 683 IPR000504 GO:0003723
Sebi614g00004 683 SMART rrm1_1 543 615 IPR000504 GO:0003723
Sebi614g00004 683 FunFam Polyadenylate-binding protein 536 623 - -
Sebi614g00004 683 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 633 683 IPR000504 GO:0003723
Sebi614g00004 683 Gene3D - 629 679 IPR012677 -
Sebi614g00004 683 PANTHER RNA BINDING PROTEIN 488 679 - -
Sebi614g00004 683 CDD RRM2_I_PABPs 540 616 IPR045305 -
Sebi614g00004 683 Gene3D - 538 592 IPR012677 -
Sebi614g00004 683 SUPERFAMILY RNA-binding domain, RBD 543 679 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi614g00004 Sebi-Chr614 86961 89878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi614g00004 489 680 Eukaryotic Initiation Factors Gene Family AT4G34110 71.354 3.31e-93 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi614g00004 K13126 - gmx:100813735 329.331