Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi610g00043 ATGCCAGAATCTGAGGAAGAAAATACAGACTTTCCTCCCAGGGCAAAGCCAACAGAGGAACCTGGGTGTGCCATGGATTTTGATCTGGACCTGGAAAGTTCATGGCCTTTGGATCACATGTCCTTTGTCTCCAACCCCATGTCTCCTTTTCTGTTCTCCACCATCTCTGACCAACCTTCTTCTCCTCTATGGGTTTTTCCTGATGGAGAAGATGACAGGCAAGCCAGGCTTGCAGCTTCAGCCTTTTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAATTGAGAAGCCAGTGGAGAATGATGAGAGCAAAAAGCTTTTGCCACCCCTACAGCCACCAGTAGAAAATCTGGATGGCTTTTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGCTACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCAGTGAGGAATGGCAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACTGTCTCCCTGATGTACATGTTTTCTGCGGATGGAGAGAATGATGGAACTCTGGGACTTCCTGGGCGAGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCAATGTTCTGTACTATTCTAGTAAAGAGTATCCACGCCGAGATCACGCTCAACATTACAATGTTCGGGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCTTTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTCTGGACCATTCATTCACTCAGATTTGCAATGAAGGACGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCTCAAACATGGGTTCCCTGTAAGCATCGAAGTGTTTTGGCCCATGGTGGTGGTCTAAAGAAAAATTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATATAGCATCCTATATCATAGATGCTCATTTGTGGGGTTTCCGGGAGGCCTGTGTTGAGCATCACTTGCAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCAAAGCATGTGCTTCTGCTCAAACATTACCCGATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCCCTCATGTTTGGGTTAACAAGTTGTTTTGCAATCTGTTTACGGAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAAGATCATAGACTTTCATGAACAGAAGACACTGCTGGGATCTATATTGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTGCTGGTATTGAACTTGAGGAGTATGGTTCAATTGAAATTATTGAAGCAACAAATGAAATAGTTAATCTTAGGCTTGAATCTATTCCAATTGCTCAATCTATTAAATCACCTCCTAGACCTGATGCCTCACCAAATATTGGGGAGGAAGTGCCACAGGATCCATCAGAACAACAAATACTGTACTGTAATGACATAAATGAAGGAGGGAGTCATGGTGATAATGCAGGTGGAAGCATTAATCATATGTCCTCCTTAGAAACTAAAAACACAAAGAAACCCCTAGAAAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCACGAAAGATCAACAAGGTTAACCGTTCCTTGACCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAACACAAGTCCACTTCCAATTGTTGGTTCCTTTCCTGAGCCTACTACTCCAAATAAGTTCAGCCAGCAAGCCTCATTAAGCATTGGGCCTGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATTTGAAGCAAACAGACAGGTTGGAATGGAAGATCAATTGCTAGGAGGAAGGATACAAAGTCTTGAGAAAGTGATTAATGATAAAGGAGGCTCTACTCGGGAGGTTGGGAAAGATTCAAAGAAGACTAGAACTAGGAGTGGCTCAAGTGAAGATAGTACAAATCCTACTTCTCATGGTTCATGCCATGGCAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACATCCAACAATGAGCAATGTGTTTTGCTGAGGGGATCACCAGAGTCAACAGTGCAGCCAATTAATACATTGAACTCTCCAACCTCCTACCACAGGCCTGACATTGTGGCCACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGCTCTAAAGACTTAAGAAATTTGTGTCCTGCAGTAGCAGAGGCCATTTTGGAGGATTTGGCTCCAGAAGCTTGTGGGACTAATCCTCCAGGTTCTGAATTGGCTCCCAAGCAGTGTATGGATACTCTTAATAAAACAGTGACACCTTTTGCAGCTAGGAAAGATGTGAAGAGTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCTTTGACCTGTGGCATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGGTTGAAATTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA 2961 0.4279 MPESEEENTDFPPRAKPTEEPGCAMDFDLDLESSWPLDHMSFVSNPMSPFLFSTISDQPSSPLWVFPDGEDDRQARLAASAFSDCHKIFSCDSNSIIEKPVENDESKKLLPPLQPPVENLDGFCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSADGENDGTLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCVGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDHSFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCKHRSVLAHGGGLKKNCSSFDGSCMGQVCMSTTDIASYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSQSMCFCSNITRFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPKIIDFHEQKTLLGSILATMKQHFQSLKIAAGIELEEYGSIEIIEATNEIVNLRLESIPIAQSIKSPPRPDASPNIGEEVPQDPSEQQILYCNDINEGGSHGDNAGGSINHMSSLETKNTKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKRVIESVQGAEGAFGLNSLNTSPLPIVGSFPEPTTPNKFSQQASLSIGPEPQMKENEFDASKVFEANRQVGMEDQLLGGRIQSLEKVINDKGGSTREVGKDSKKTRTRSGSSEDSTNPTSHGSCHGSPPNESSPVKDIFITSNNEQCVLLRGSPESTVQPINTLNSPTSYHRPDIVATELQEPFGGMLIEDAGSSKDLRNLCPAVAEAILEDLAPEACGTNPPGSELAPKQCMDTLNKTVTPFAARKDVKSVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi610g00043 986 MobiDBLite consensus disorder prediction 751 776 - -
Sebi610g00043 986 Gene3D - 888 972 - -
Sebi610g00043 986 MobiDBLite consensus disorder prediction 514 534 - -
Sebi610g00043 986 MobiDBLite consensus disorder prediction 1 22 - -
Sebi610g00043 986 Pfam RWP-RK domain 585 633 IPR003035 -
Sebi610g00043 986 ProSiteProfiles PB1 domain profile. 891 973 IPR000270 GO:0005515
Sebi610g00043 986 CDD PB1_NLP 892 972 IPR034891 -
Sebi610g00043 986 MobiDBLite consensus disorder prediction 727 776 - -
Sebi610g00043 986 SUPERFAMILY CAD & PB1 domains 891 976 - -
Sebi610g00043 986 SMART PB1_new 891 973 IPR000270 GO:0005515
Sebi610g00043 986 MobiDBLite consensus disorder prediction 552 581 - -
Sebi610g00043 986 FunFam RWP-RK domain-containing protein 888 972 - -
Sebi610g00043 986 MobiDBLite consensus disorder prediction 730 750 - -
Sebi610g00043 986 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Sebi610g00043 986 PANTHER PROTEIN NLP8 57 985 IPR045012 GO:0003700
Sebi610g00043 986 Pfam PB1 domain 892 972 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi610g00043 Sebi-Chr610 541310 545578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi610g00043 260 986 NLP Transcription Factor Family AT4G24020 53.596 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi610g00043 PB1 4.2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi610g00043 - - gmx:100786118 1701.8