Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi610g00014 | ATGGTGTCAAAAAACCCGAACCCTTCAGAAGCTCTGTACTTGGATCCCAATGGCATGGCTCTGGCTGGCCTAGTTCCCTTCACTGATTCTATGGAGGACCTAACCAAGAAGACCCGCAAGCCGTACACTATCACCAAGTCTAGGGAGAGCTGGACTGAACCCGAGCATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAAACAGTTATTCAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCTGCTCATCCATATCCTCAGAAAGCATCCAAAAATGCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCTGCTTTGCTTGAACCTGGTTATATCCTAAAGCATGATTCTTCATCAATGCTTAAAACTCCTATTACTAACACTGCAGTGTCTTCCTGGTCAAACAACACTTTGCAGAAAACAGCCAATGTATTGCAAGGACAAAAGGTGAATAATTGTTGCAGTAGCAGTGAAAGCACTCCTAGACCACAGCTGGTTCGTGAATCTAATGGTCAAAGGAATAATAACCATCCACTGAGAGGCAAGGATGAAGGATATGATTTCCCTTCCTAA | 681 | 0.4317 | MVSKNPNPSEALYLDPNGMALAGLVPFTDSMEDLTKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSSSALLEPGYILKHDSSSMLKTPITNTAVSSWSNNTLQKTANVLQGQKVNNCCSSSESTPRPQLVRESNGQRNNNHPLRGKDEGYDFPS | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi610g00014 | 226 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 46 | 95 | IPR006447 | GO:0003677 | |
| Sebi610g00014 | 226 | Pfam | Myb-like DNA-binding domain | 48 | 93 | IPR001005 | - | |
| Sebi610g00014 | 226 | SMART | sant | 47 | 95 | IPR001005 | - | |
| Sebi610g00014 | 226 | FunFam | protein REVEILLE 6 isoform X1 | 50 | 98 | - | - | |
| Sebi610g00014 | 226 | MobiDBLite | consensus disorder prediction | 189 | 212 | - | - | |
| Sebi610g00014 | 226 | ProSiteProfiles | SANT domain profile. | 46 | 97 | IPR017884 | - | |
| Sebi610g00014 | 226 | ProSiteProfiles | Myb-like domain profile. | 43 | 93 | IPR001005 | - | |
| Sebi610g00014 | 226 | SUPERFAMILY | Homeodomain-like | 42 | 98 | IPR009057 | - | |
| Sebi610g00014 | 226 | Gene3D | - | 51 | 98 | - | - | |
| Sebi610g00014 | 226 | MobiDBLite | consensus disorder prediction | 98 | 130 | - | - | |
| Sebi610g00014 | 226 | PANTHER | SWI/SNF COMPLEX-RELATED | 31 | 211 | - | - | |
| Sebi610g00014 | 226 | CDD | SANT | 50 | 93 | IPR001005 | - | |
| Sebi610g00014 | 226 | MobiDBLite | consensus disorder prediction | 189 | 226 | - | - | |
| Sebi610g00014 | 226 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 43 | 97 | IPR017930 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi610g00014 | Sebi-Chr610 | 177605 | 180957 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Sebi610g00014 | Myb_DNA-binding | 2.3e-10 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi610g00014 | - | - | gmx:778166 | 356.295 |