Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi610g00009 ATGGCAGACCAGTCACCACAATTGTCTCCAAAAACTTACAAACTAACAGCTACTTCAATCTCCTACACCAAATCAACATCCACCAACAGCACCTTTGCATTTGCACCATTCTTCCTCTTCAAACATTGTACTTCAACCCCACCAACTTACATCCTCAAAGATGTCTCCCTCACAGCTTATCCCTCTGAGATCCTAGCCATTGTAGGTCCAAGTGGTGCTGGAAAATCCACTCTTTTAGACATTCTTTCTGCTCGAACATTACCCTCCAATGGTTCTCTTTCCCTTAACTCTTCCCCTCTCAACCCTTCCTCCTACCGCAAACTCTCTGCCTATGTCCCTCAACATGATGCATGTCTCCCTCTGCTTACTGTTTCTGAAACTTTTGCTTTCTCTGCTCGCCTTCTCAAGCCTAAGACTTGTGACATTGTTGCCATTGTTTCCTCTCTTCTCACTGAACTGAGGCTGACCCATTTGGCTAACACAAGGCTTGCTCATGGGCTATCTGGTGGAGAACATAGAAGGGTCTCCATTGGTTTGAGTCTCCTTCATGATCCTGCTGTTTTGCTCCTTGATGAACCCACTTCTGGTCTTGACAGTACCTCTGCTTTCAAAGTCATGCAAATTCTCAAATCAACTTGTGTTTCTAGAAACAGGACAATTATCCTCTCCATTCACCAACCAAGCTTCAAGATCCTCTCTTGTATTGATAGAATTTTACTTCTATCAAAAGGGACCGTGGTTCATCAAGGAAGCATTGCTTCACTCCAAGCATTCTTGCACTCAAAAGGGTTCACTGTCCCTCATCAGCTCAATGCTTTGGAATATGCAATGGAAATACTAAACCAATTGAATGAGGTTAAACCCATCACTCTCCCAAGTCTCCCTGAATCACCAGAAAGTTCTACAAGTTCTCTAATGTCTGACAATGAAACTACAACAACCAAAGAGATCAGGTACAAGAGTTCTAGGATTCATGAAATTTGTACTCTTTATAACAGGTTTTGGAAGATCATTTACAGAACAAGGCAGCTTCTTTTGACAAACACAGCAGAAGCACTTATTGTGGGTCTTGTTTTAGGAACAATTTATATCAATATTGGGTTTGATAAGGAAGGTATTGAGAAAAGGTTTGGTCTTTTTGCCTTCACTCTCACATTCCTCTTATCCTCCACAACTGAGACACTTCCCATCTTTATCAATGAGAGGCCAATCTTGCTAAGAGAAACTTCAAGTGGGGTTTATAGGCTATCATCTTATCTAATTGCAAACACACTTGTTTTCTTGCCATACTTGTTGGTGGTTGCTATCATATACTCCATCCCAGTCTACTTCCTAGTGGGTCTTTGTGCTTCTTGGCTATCTTTTGCTTATTTTGTTTTGGTGATATGGGTCATAGTTCTAATGGCAAACTCATTTGTGCTCTTTTTGAGCTCTCTTGCTCCAAACTACATTGCTGGGACTTCACTCTTGACAGTACTTCTTGCAGCATTTTTTCTATTCTCTGGCTACTTTATCTCAAAGGATAGCTTACCAAAATACTGGCTCTTCATGTACTTCTTCTCTATGTACAAATACGCTCTTGATGCACTTCTAATCAATGAGTACTCTTGCTTAGCTACAAGGTGTTTTATATGGTACCAAGAGAATCAAGAGTGCATGGTCACTGGAGGTGACGTGCTACAGAAGAGAGGGCTCCACGAGAGTGAAAGATGGACCAACGTGTACTTCTTGATTGGGTTCTTTGTGTTTTATCGTGTGCTCTGCTTCTTGGTTTTAATTAGAAGAGTTTCAAGATCCAAACTTGAAAACGTTGAGAATTTTACTAGTATTTTGTTCATTTCTGATCAATCCTATATTGTATGA 1863 0.4085 MADQSPQLSPKTYKLTATSISYTKSTSTNSTFAFAPFFLFKHCTSTPPTYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARTLPSNGSLSLNSSPLNPSSYRKLSAYVPQHDACLPLLTVSETFAFSARLLKPKTCDIVAIVSSLLTELRLTHLANTRLAHGLSGGEHRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKSTCVSRNRTIILSIHQPSFKILSCIDRILLLSKGTVVHQGSIASLQAFLHSKGFTVPHQLNALEYAMEILNQLNEVKPITLPSLPESPESSTSSLMSDNETTTTKEIRYKSSRIHEICTLYNRFWKIIYRTRQLLLTNTAEALIVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAIIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMYFFSMYKYALDALLINEYSCLATRCFIWYQENQECMVTGGDVLQKRGLHESERWTNVYFLIGFFVFYRVLCFLVLIRRVSRSKLENVENFTSILFISDQSYIV 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi610g00009 620 Pfam ABC transporter 52 195 IPR003439 GO:0005524
Sebi610g00009 620 Pfam ABC-2 type transporter 326 535 IPR013525 GO:0016020|GO:0140359
Sebi610g00009 620 Gene3D - 39 287 IPR027417 -
Sebi610g00009 620 FunFam ATP-binding cassette transporter 41 261 - -
Sebi610g00009 620 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 586 - -
Sebi610g00009 620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 268 IPR003439 GO:0005524
Sebi610g00009 620 SMART AAA_5 61 245 IPR003593 GO:0016887
Sebi610g00009 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 259 IPR027417 -
Sebi610g00009 620 Pfam ABC-2 type transporter 225 285 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi610g00009 Sebi-Chr610 102949 104811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi610g00009 45 263 Calmodulin-binding Proteins AT2G36910 28.879 1.36e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi610g00009 K05681 - gmx:100790712 928.317