Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi610g00003 ATGGAACAGAAGCACGTCCTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTAGGTGTGGGACTGGGGTTAAGCACAGGACAGGTTGTGCAAAATTGGGTTGGAGGAGATACTAAGTCTAATGAGATTTCTGGGGAGCAGATTGTGCTGGAGCTCAAGAACATAGTGGTTGATGGGAAGAACAGCACAGTCACATTTGATGACTTTCCTTATTACTTAAGTGAAAGAGTCCGGGTTTTGTTGACAAGTGCTGGATATGTTCATTTAAAACAACAACACTTTTCCAAGCACATGAGGAACCTTTTACCAGCAAGCAAAGCTATTTTGCTTTATGGACCTGCAGAACCTTATCACCAAAAGCTTGCCCAAGCTTTAGCACATTGCTTTGAATCGAAGTTACTGTTGCTAGATGTTACTGACTTCTCTTTGAAGATGCAGAGGAAATATGGATGTTCTAAAAAAGAACCATATTTTAAAAGGTCCATATCTGAGGTGACTTTGGAGCGCATATCTGATTTGTTTGGTTCCTTGTCGATCCTCCCTTCAACAGGTACACTAAGTCGACAAAATAGTGGAATTGAAAATTCCAGCAATTCTCCAAAACTTCGTAGGAACGCCTCTAATGCATCTGAATCCAGTAGCAGTTCCGAAAATGGTCCATTGGATCCAGCTTCTTTTAAGTGTGCAAGCCGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTATATGAGGTCTTGGTATCTATGTCAGAAACTGGATCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTCTTCGATCACCAAGGATATTCAATTTGTTCCAAAAGCTGCTAAAGAAACTTTCAGGGTCAGTATTAATACTCGGTTCCCGGATTTACAGTTCAGAAGATGATTGTACAGAAGTTGGTGAAAAGCTCACTGTGTTATTCCCTTACAACATTGAGATCGAACCACCTCAAGATGAGACTCGTCTTGGGAAGTGGAAAACCCAGCTAGCAGTGGCCATGAAATTAATTCAGTTTGAAGATAACAGAAACCACATTGCTGAAGTACTTGCAGAAAATGACATTGATTGTAATGACTTGGATTCAATCTGCCACGATGACACTGACCTACTCAGTGATTATATTGAAGAGATTGTGGTATCTGCAATTTCTCACCACTTGATGGATACCAAACATCCAGAATACCGAAATGGAAAGCTAATTATATCAGCCAAGAGTTTGTCCCATGTATTGAAGCTGTTCCGGGAAGGTGGAAGTTGTGGAAAAGATAATACCAAGACTAAAGAATCAAGCAAGGAAGTTCCTTCTGACAATGAGTATGAGAAGCGTATAAGAGCAGAGGTTATCCCAGCAAAAGAGTTAGGGGTTACATTTGCAGATATTGGTGCATTGGATGATATTAAGGAATCACTTCAGGAATTGGTCATACTTCCCCTTAGAAGACCAGACCTATTCAAAGGAGATGGACTCCTGAAACCTTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAAGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATATCCACCATCACTTCAAAATGGTTTGGAGAAGATGAGAAGAATGTCCGAGCTCTGTTTTCACTAGCAGCAAAGGTTGCCCCAACTATTATCTTCATTGATGAGGTTGATAGCATGCTTGGACAGCGGTCCAGATATTGTGAGCACGAGGCAATGAGAAAGATAAAAAATGAATTTATGACTCACTGGGATGGGCTATTATCAAAAGCTCATGAGCAAGTTCTGGTTCTTGCTGCCACTAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGACAAGGGAAGTGATCTTGAAAACTCTACTAGCTAAGGAAAAATATGAAAATATAGACTTCAAAGAACTTTCAACTATGACAGAAGGATATACTGCAAGCGATCTTAAGAATTTGTGCATGACGGCAGCTTATCAACCTCTTAGGGAGCTAATGCGGAAAGAGAGGGCGAAAGAAATGGTAGTTACGAAATCACTTCTGATAATAAAAAGAAGAAAAAGGAGGCAGAAGTTCAAAGCTCAAAAGATGCTTCCAATGCCACAAAAGATAAAGAAGACCAAGCTCAAAGCTCAGAAGATGCTTCCAATGCTACAAAAGATAAAGAAGACCAAGTTCAAAGCTCACAAGATGCTTCCAATGCTACAGAAGATAAAGAAGACCAAGTTCAAAGCTCACAAGACAATCCCAGTGCTACAGAAGATAAAGAAGACCAAGTGA 2343 0.4055 MEQKHVLLSALSVGVGLGVGLGLSTGQVVQNWVGGDTKSNEISGEQIVLELKNIVVDGKNSTVTFDDFPYYLSERVRVLLTSAGYVHLKQQHFSKHMRNLLPASKAILLYGPAEPYHQKLAQALAHCFESKLLLLDVTDFSLKMQRKYGCSKKEPYFKRSISEVTLERISDLFGSLSILPSTGTLSRQNSGIENSSNSPKLRRNASNASESSSSSENGPLDPASFKCASRFCFDEKLFVQSLYEVLVSMSETGSIILYIKDVEKLFLRSPRIFNLFQKLLKKLSGSVLILGSRIYSSEDDCTEVGEKLTVLFPYNIEIEPPQDETRLGKWKTQLAVAMKLIQFEDNRNHIAEVLAENDIDCNDLDSICHDDTDLLSDYIEEIVVSAISHHLMDTKHPEYRNGKLIISAKSLSHVLKLFREGGSCGKDNTKTKESSKEVPSDNEYEKRIRAEVIPAKELGVTFADIGALDDIKESLQELVILPLRRPDLFKGDGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSRYCEHEAMRKIKNEFMTHWDGLLSKAHEQVLVLAATNRPFDLDEAIIRRFQRRIMVGLPSAETREVILKTLLAKEKYENIDFKELSTMTEGYTASDLKNLCMTAAYQPLRELMRKERAKEMVVTKSLLIIKRRKRRQKFKAQKMLPMPQKIKKTKLKAQKMLPMLQKIKKTKFKAHKMLPMLQKIKKTKFKAHKTIPVLQKIKKTK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi610g00003 780 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 459 635 - -
Sebi610g00003 780 SMART AAA_5 497 634 IPR003593 GO:0016887
Sebi610g00003 780 Pfam AAA+ lid domain 653 692 IPR041569 -
Sebi610g00003 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 680 IPR027417 -
Sebi610g00003 780 Pfam ATPase family associated with various cellular activities (AAA) 501 631 IPR003959 GO:0005524|GO:0016887
Sebi610g00003 780 MobiDBLite consensus disorder prediction 185 220 - -
Sebi610g00003 780 Gene3D - 633 699 - -
Sebi610g00003 780 ProSitePatterns AAA-protein family signature. 604 623 IPR003960 GO:0005524|GO:0016887
Sebi610g00003 780 Gene3D - 459 632 IPR027417 -
Sebi610g00003 780 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi610g00003 Sebi-Chr610 41336 47154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi610g00003 460 690 Calmodulin-binding Proteins AT3G56690 40.000 1.84e-41 161