Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00174 ATGCCTGCCGTTTACGGTGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGGTATCAGGACCAGTCGTGGTTGCAGATGGCATGGCTGGGGCTGCTATGTATGAACTGGTCCGTGTTGGTCGTGATAATCTCATTGGTGAAATTATTCGTCTGGAAGGGGACTCTGCTACTATCCAAGTTTATGAGGAAACGGCTGGTTTAATGGTTAATGATCCTGTATTACGAACACACAAGCCTTTGTCCGTGGAGTTGGGGCCTGGGATATTGGGAAATATTTTTGATGGAATTCAGAGGCCTCTGAAAACTATTGCTAAAAGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTTGACAAAGATACACTTTGGGAATTTCAGCCTAAGAAAATCGGTGAAGGAGACCTATTAACCGGTGGAGACTTATATGCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTTCCTCCTGATGCCATGGGAAAAATTACCTACATTGCACCAGCTGGCCAATATTCCTTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAGAAGTTCACCATGCTTCAGACTTGGCCTGTACGTACACCAAGGCCCGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCCTCAGTTCTTGGTGGGACTTGTGCCATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCTGTTGTTTACGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTTCTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAACGTACAACATTAGTGGCTAATACTTCAAACATGCCGGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACTTTAGCTGAGTATTTTAGAGATATGGGCTATAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAGGCATTGCGTGAAATCTCTGGACGGCTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTAAAATGTCTCGGAGGTCCCGAACGTACTGGTAGTGTAACCATTGTTGGTGCTGTTTCCCCACCTGGTGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTCAGCATTGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCACAGAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCAAAGTACTCAACGGCACTCGAATCCTTTTATGAGCAATTTGATCCAGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCTTTTACACCATATGACAAATTCTGTCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCTAATCAGGTATTTAGGTTCAAGTTAACAGTTCATTCCATCTGCTGTTCTGCTGTACTTCACCCTCATATGACTGGAAATTGTTTGCCTCTTTCTGTTCTGCATTCTTTGGCTGTAGAGAGGGGAGCTGGTACTGATGGTCAGAAAATAACTTACACCCTTATCAAGCATCGTATGGGAGATCTCTTCTATCGTTTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCTGCTTTGGTTGAAAAATTCAAGAAGTTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGATGAAACCCGATAA 1974 0.4377 MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDAMGKITYIAPAGQYSLKDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQVFRFKLTVHSICCSAVLHPHMTGNCLPLSVLHSLAVERGAGTDGQKITYTLIKHRMGDLFYRLVSQKFEDPAEGEAALVEKFKKLHEDLTNGFRNLEDETR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00174 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Sebi60g00174 657 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Sebi60g00174 657 Gene3D - 91 457 IPR027417 -
Sebi60g00174 657 Gene3D - 20 89 IPR023366 -
Sebi60g00174 657 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Sebi60g00174 657 CDD ATP-synt_V_A-type_alpha_C 475 556 - -
Sebi60g00174 657 NCBIfam V-type ATPase subunit A 20 558 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Sebi60g00174 657 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Sebi60g00174 657 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Sebi60g00174 657 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Sebi60g00174 657 FunFam V-type proton ATPase catalytic subunit A 193 457 - -
Sebi60g00174 657 Gene3D - 134 205 - -
Sebi60g00174 657 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Sebi60g00174 657 Coils Coil 635 655 - -
Sebi60g00174 657 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Sebi60g00174 657 Gene3D - 459 578 IPR024034 -
Sebi60g00174 657 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Sebi60g00174 657 CDD V_A-ATPase_A 88 460 - -
Sebi60g00174 657 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 655 IPR022878 GO:0046034|GO:0046961
Sebi60g00174 657 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Sebi60g00174 657 Hamap V-type ATP synthase alpha chain [atpA]. 19 656 IPR022878 GO:0046034|GO:0046961
Sebi60g00174 657 FunFam V-type proton ATPase catalytic subunit A 459 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00174 Sebi-Chr60 2237298 2242510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00174 1 657 Primary Pumps ATPases(2) AT1G78900 89.346 0.0 1201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00174 K02145 - gmx:100775727 1206.82