Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00139 ATGGCTAAGAAATCGCAAGAAGAACACTTGTTCTTCTTCTCTTCTACTGCCAACACCAGGAAACGCACACGCAAAAGCACTCCCAAGAGACTCACCTCCGCAACGAAGCTCATCTACCGCGGTGTCACAAGACACCACCACAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCGGCCACGGCATATGATATGGCAGCCATAGAGTACCGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATGTCAATTGGTTACGTCCAAAAGCCCAAGAAAATAATCAAGAACTAAACCTTAATTCTGAGCTTGAGCTGGGCCCAAGCCCAACCATTGGTGAGATGACACCACCTAGTGCCACAACAACACCTTCTGCACTTGGGCTTCTCTTACAATCATCCAAATTCAAAGAAATGCTAGAAAAGACGACTACTAGTTCTTCATCATCACCTACAGATCCAGCACCTGCAGAGTCATCAACCCCTCCTCGTCGAACTTTCCCCGAAGATATTCAAACAATCTTTGAATGTCAAGATTCAGGGATCTACGCTGAAAATGATCATGACATTATATTGGTGACTTGA 636 0.4544 MAKKSQEEHLFFFSSTANTRKRTRKSTPKRLTSATKLIYRGVTRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVNWLRPKAQENNQELNLNSELELGPSPTIGEMTPPSATTTPSALGLLLQSSKFKEMLEKTTTSSSSSPTDPAPAESSTPPRRTFPEDIQTIFECQDSGIYAENDHDIILVT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00139 211 Gene3D AP2/ERF domain 38 98 IPR036955 GO:0003700|GO:0006355
Sebi60g00139 211 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 MobiDBLite consensus disorder prediction 157 184 - -
Sebi60g00139 211 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 155 - -
Sebi60g00139 211 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 MobiDBLite consensus disorder prediction 114 140 - -
Sebi60g00139 211 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Sebi60g00139 211 FunFam AP2-like ethylene-responsive transcription factor 37 98 - -
Sebi60g00139 211 SUPERFAMILY DNA-binding domain 38 98 IPR016177 GO:0003677
Sebi60g00139 211 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00139 Sebi-Chr60 1846859 1850675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00139 39 209 AP2-EREBP Transcription Factor Family AT1G79700 49.708 4.15e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi60g00139 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00139 K09285 - aew:130750008 196.438