Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00108 ATGCCTGCCGCTGCTGGTGGCGACAATATTTGGGGGCAAACGGTGTGTGTCACCGGCGCCGATGATCCAAAAAATGATCACTTGAAAGAGTTGGAAGGAGCGAAGGAGAGGCTAACTCTGCACAAGGTTGATCTTCTTCATCTTCCTTCTATTCAACCTGTTTTTCGAGGATGCCATGGTGTCTTCCACACAGCTTCTCCGGTCACCGACAACCCTGAAGAGATGTTAGAGCCAGCAGTGAATGGAGCAAAGAATGTGATTGTGGCAGCTGCAGAAGCACAAGTGCGACGCGTGGTCTTCACTTCATCCATTGGCACAGTCTATATGGACCCCAATACCAGTAGGGATGTGCTCGTTGATGAGTCCTGCTGGAGTGATTTGGAGTACTGCAAAAACACTAAGAACTGGTATTGCTATGGGAAGACAGTGGCTGAAAAAACAGCATGGGATGTAGCAAAAGAGAAAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTTGGTTCTTGGACCATTACTACAATCCACCATTAATGCCAGCACAGTTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACTTATGTCAATGCCACTCAGGCTTATGTAGATGTCAGGGATGTGGCATTAGCACATGCTCTTGTTTATGAGACACCTTCTGTTTCTGGTAGATACATTTGTGCAGAAAGTTCTCTGCATCGTGGTGAGCTAGTTGAAATTCTGGCCAAGTACTTCCCTGAGTACCCACTTCCTACCAAACGTTTGCAGTTGAGAATGCCTTACAAGGATTATGGAAGATGTTCAGATGAGAAGAACCCAAGGGTAAAGCCTTACATATTTTCAAATAAAAAGCTGAAAGACTTGGGATTTGAATTCACCCCAGTGAAGCAGTGTTTATATGAAACCGTTAAGAACCTTCAGGAGAAAGGCCACCTTCCTGTCCCCACAAAGGAAGAGGAAGAGGACTCCATTTAA 972 0.4609 MPAAAGGDNIWGQTVCVTGADDPKNDHLKELEGAKERLTLHKVDLLHLPSIQPVFRGCHGVFHTASPVTDNPEEMLEPAVNGAKNVIVAAAEAQVRRVVFTSSIGTVYMDPNTSRDVLVDESCWSDLEYCKNTKNWYCYGKTVAEKTAWDVAKEKGVDLVVVNPVLVLGPLLQSTINASTVHILKYLTGSAKTYVNATQAYVDVRDVALAHALVYETPSVSGRYICAESSLHRGELVEILAKYFPEYPLPTKRLQLRMPYKDYGRCSDEKNPRVKPYIFSNKKLKDLGFEFTPVKQCLYETVKNLQEKGHLPVPTKEEEEDSI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00108 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 305 IPR036291 -
Sebi60g00108 323 Gene3D - 12 321 - -
Sebi60g00108 323 CDD FR_SDR_e 15 289 - -
Sebi60g00108 323 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 28 302 - -
Sebi60g00108 323 FunFam Dihydroflavonol reductase 12 313 - -
Sebi60g00108 323 Pfam NAD dependent epimerase/dehydratase family 26 219 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00108 Sebi-Chr60 1534247 1537784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00108 12 252 Monolignol Biosynthesis Gene Families AT1G80820 67.416 9.85e-119 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00108 K09753 - gmx:100799994 499.59