Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00098 ATGGCTAGACCCCAACAACGTTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTAAAGACTAGAATATGGCTAGGAACATTTGAAACGGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTCATGTGTGGCCCAAAGGCACGCACCAATTTCCCTTACAACCCAAATGGATCACACTCTTCTTCCTCAAAGCTTCTCTCTCCTACTTTGACTGCCAAGCTACACAAATGTCACATGGCTTCCCTTTCCCTTCAAATGGCCAATCAGAAACCACCAGAGAGACAGCCTCAACCATCCCACAGATCCAATTCATTTGCCTCTCCCAATGCCATTGCTGGAACAACCTCTGACTCTGCTTTTAGATGGCTAGAAGGCAATTGGGTTGGCGTGGATGGCCAAGTTGAAGTTTCCCACCAACAATTTCAACCTGTTCTTGAAGATGATCACATAGAGCAGATGATACAGGAGTTGCTTCATTATGGATCAATTGAGCTTTCCTCTGTTGGCTCAGCTTAG 552 0.471 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGSHSSSSKLLSPTLTAKLHKCHMASLSLQMANQKPPERQPQPSHRSNSFASPNAIAGTTSDSAFRWLEGNWVGVDGQVEVSHQQFQPVLEDDHIEQMIQELLHYGSIELSSVGSA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00098 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Sebi60g00098 183 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Sebi60g00098 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sebi60g00098 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sebi60g00098 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sebi60g00098 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 116 - -
Sebi60g00098 183 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Sebi60g00098 183 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Sebi60g00098 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sebi60g00098 183 MobiDBLite consensus disorder prediction 99 122 - -
Sebi60g00098 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00098 Sebi-Chr60 1373324 1374030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00098 1 180 AP2-EREBP Transcription Factor Family AT5G25190 64.706 2.88e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi60g00098 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00098 - - gmx:100777851 301.597