Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00088 ATGCATCAACAACCGGCTACAGCTGCTTTCTCTTCTGACAGTGAAAGTCTCTCTCCCACTACCAACAACTTAATCTTCACATCCTCCCAACACAACAAATTACCTGCTGCTCCAACTTCTTACATTCTCTCCTTCGGTGACTCCACCGTTGTCACAGCTACGCGCCACGGCGGAAAACAGCCCTTGCACGACGCTCCCTCTAAACATGAAAATCACTTCCAACAACCAATTAGGCCGCCCAACCAAACAGTAACAAAGAAAAGTAGAAGCTCTACGGAGACACTTGACCACATAATGGCTGAGAGAAAACGGAGACGGGAACTCACAGAGAGGTTCATTGCACTTTCAGCCACTATACCTGGCTTGAAGAAGATTGACAAGTCGACTATACTTGGAGAAGCAATCAGTCATGTGAAACGGCTTCAAGAACGTGTAAGAGAGTTGGAGGAACAAAGTAAGAAGACAAGTGTAGAGTCAGTGTCATTCATTCGAAAATCCTACCTCACAGGCACAGGTGCAATATTGAACAAGTCTGATGATGATGATTGCTATAGAAGCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTCTTCAAAAAGGACATACTCCTCCGGATTCACTGCAAGATACAAAATGGCATTTTGCTCAAAATTCTCGACCATCTTAAAAATCTTCATCTCTCCACAATCAGCAATAGTGTCATGCCATTTGGGAATTCCACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGTAACAATGGATGATCTAGTCAAAAATCTGAGACTGGCTCTCTTGGAGTCATCTGAAGAATTACAGTGA 834 0.4376 MHQQPATAAFSSDSESLSPTTNNLIFTSSQHNKLPAAPTSYILSFGDSTVVTATRHGGKQPLHDAPSKHENHFQQPIRPPNQTVTKKSRSSTETLDHIMAERKRRRELTERFIALSATIPGLKKIDKSTILGEAISHVKRLQERVRELEEQSKKTSVESVSFIRKSYLTGTGAILNKSDDDDCYRSNEALPTVEARVFKKDILLRIHCKIQNGILLKILDHLKNLHLSTISNSVMPFGNSTLDISIIAQMGDKFNVTMDDLVKNLRLALLESSEELQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00088 277 PANTHER BHLH TRANSCRIPTION FACTOR 10 271 - -
Sebi60g00088 277 Pfam Helix-loop-helix DNA-binding domain 97 142 IPR011598 GO:0046983
Sebi60g00088 277 SMART finulus 98 147 IPR011598 GO:0046983
Sebi60g00088 277 Gene3D - 90 161 IPR036638 GO:0046983
Sebi60g00088 277 MobiDBLite consensus disorder prediction 55 94 - -
Sebi60g00088 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 159 IPR036638 GO:0046983
Sebi60g00088 277 MobiDBLite consensus disorder prediction 1 23 - -
Sebi60g00088 277 MobiDBLite consensus disorder prediction 74 89 - -
Sebi60g00088 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
Sebi60g00088 277 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00088 Sebi-Chr60 1254524 1255819 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00088 88 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.739 2.47e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi60g00088 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00088 - - gmx:100777846 307.76