Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi60g00015 ATGGCTGCAGGTTCGTTGGGAGGGTTGCAAGAACACCTCAAGTTGGCCAGAGAGTACGCTCTCGAAGGACTCTATGATACCTCTATTATCTTCTTCGATGGCGCTCTTGCCCAGATCAACAAGCACCTAAACACTGTTGATGACCCTTTAATTCGTGCAAAATGGATGAATGTTAAGAAAGCCCTTTCTGAGGAAACAGAAGTTGTAAAGCAACTAGATGCAGAGAGAAGGGCTTTTAAAGATAACCCTGTTGGAAGGCGCCCTTCTTCGCCTCCAATATCTACTAAATCCTCATTTGTTTTTCAACCATTAGATGAGTATCCTACTTCATCAAGTGGTCCCATTGATGATCCTGATGTATGGAGGCCACCTAGCAGAGACACTTCAAGCAGAAGACCCACAAGGCCTGGTCAAATGGGTACTCGGAAATCTCCACAAGATGGGGCATGGGCTCGAGGTTCTACAAGAACAGGTACTACTGGGCGTGGTGCAAAAGCTGGTGCTACAAGTAGAGTTAACTCAGGGGCACGAGCATCAACTACAGGAAAGAAAGGCAGTGTTTCTGGAAAGTCTAGCAAGATAGATACACCTGTAACTAATGGTGATGCTGCTGAAGATGGTAAGTCAAAGAAGGGACAGTATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAACGGGATGTGTTAGAAACATCTCCTGGAGTGAGATGGGATGATGTCGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGAAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGAGCATCTGGAGAGCATGAATCATCCAGAAGGGTGAAATCTGAACTCCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAGGAGCTGATCCGGATAAATTTGAAGACTGTGGCCCCTGATGTCAATATAGATGAGGTGGCTCGCCGAACAGAGGGCTATAGTGGAGATGATTTGACAAATGTTTGCCGTGATGCTTCCTTGAATGGTATGAGGCGTAAAATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTCGCCATGTGCGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCATGAGAAGTGGTTTACTGAATTTGGATCAGCATAA 1566 0.4457 MAAGSLGGLQEHLKLAREYALEGLYDTSIIFFDGALAQINKHLNTVDDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPVGRRPSSPPISTKSSFVFQPLDEYPTSSSGPIDDPDVWRPPSRDTSSRRPTRPGQMGTRKSPQDGAWARGSTRTGTTGRGAKAGATSRVNSGARASTTGKKGSVSGKSSKIDTPVTNGDAAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi60g00015 521 Gene3D - 413 497 - -
Sebi60g00015 521 Gene3D - 3 80 - -
Sebi60g00015 521 MobiDBLite consensus disorder prediction 79 217 - -
Sebi60g00015 521 SMART AAA_5 271 414 IPR003593 GO:0016887
Sebi60g00015 521 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 521 IPR028596 GO:0008017|GO:0008568|GO:0051013
Sebi60g00015 521 Pfam AAA+ lid domain 432 473 IPR041569 -
Sebi60g00015 521 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Sebi60g00015 521 MobiDBLite consensus disorder prediction 148 198 - -
Sebi60g00015 521 ProSitePatterns AAA-protein family signature. 384 403 IPR003960 GO:0005524|GO:0016887
Sebi60g00015 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 507 IPR027417 -
Sebi60g00015 521 Pfam Vps4 C terminal oligomerisation domain 474 519 IPR015415 -
Sebi60g00015 521 Pfam ATPase family associated with various cellular activities (AAA) 275 412 IPR003959 GO:0005524|GO:0016887
Sebi60g00015 521 Gene3D - 233 512 IPR027417 -
Sebi60g00015 521 CDD Kp60-NTD 9 75 - -
Sebi60g00015 521 MobiDBLite consensus disorder prediction 88 109 - -
Sebi60g00015 521 FunFam Katanin p60 ATPase-containing subunit A1 413 497 - -
Sebi60g00015 521 PANTHER AAA DOMAIN-CONTAINING 25 520 - -
Sebi60g00015 521 FunFam Katanin p60 ATPase-containing subunit A1 233 401 - -
Sebi60g00015 521 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi60g00015 Sebi-Chr60 262847 266590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi60g00015 227 513 Calmodulin-binding Proteins AT3G56690 39.933 3.14e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi60g00015 K07767 - gmx:100787634 915.605