LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi60g00013	ATGGAGAAAGAAGAAGGTGTTGGAGTTGAGATCACTACTGAGCTAAGGTTAGGTCTGCCCGGTGGTGTGGTAGTGAACAACAAGAGGAAGTTCTCCCAGATTGACGGCGATGAAAATAGCTCCTCCGGTGACCGGAGGACAACGGAGAAGAAGAAGAATGAACAAGTGGTGGTGGGGTGGCCTCCGGTGTGTTCATACAGGAAGAAGAACTACAGTGTGAGTGTGAGTGAAGGTTCGAAAATGTATGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATAGATCTTGCTTTGCATAATGGATACTCTCACTTAGCCTTCGCTTTGGAGAAGCTCTTTACTTGCTATGGAATCGAGGAGGCATTGAAGGATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCGAAGGGGTTTGGTCTGCAACCAAAAGGATCTTTGAAGGGATTCATAGAAGGCGTGGCAAAGTGA	570	0.4649	MEKEEGVGVEITTELRLGLPGGVVVNNKRKFSQIDGDENSSSGDRRTTEKKKNEQVVVGWPPVCSYRKKNYSVSVSEGSKMYVKVSMDGAPFLRKIDLALHNGYSHLAFALEKLFTCYGIEEALKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVAK	189

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi60g00013	189	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	12	170	IPR003311	GO:0005634\|GO:0006355
	Sebi60g00013	189	SUPERFAMILY	CAD & PB1 domains	72	165	-	-
	Sebi60g00013	189	MobiDBLite	consensus disorder prediction	33	53	-	-
	Sebi60g00013	189	Pfam	AUX/IAA family	39	172	IPR033389	-
	Sebi60g00013	189	Gene3D	-	75	177	-	-
	Sebi60g00013	189	ProSiteProfiles	PB1 domain profile.	80	168	IPR000270	GO:0005515
	Sebi60g00013	189	FunFam	Auxin-responsive protein	75	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi60g00013	Sebi-Chr60	197707	200002	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi60g00013	78	166	B3 DNA Binding Superfamily	AT1G34310	39.326	2.22e-10	57.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Sebi60g00013		AUX_IAA	4.3e-47	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi60g00013	K14484		-	gmx:100791342	275.018