Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi609g00022 ATGACTAATACTATGATGAATGAGAGCAGTGTGAGGCTACTACCACTGGAGATAGTAGCTGAAATACTCTCATGGTTACCGGTTGAGTCTATTCTACGCTTCAGCTGCGTTTGCAAGTCATGGTACTCACTCATCTCACACTCTCAATTCATCAACCTTCATCTTTCTCGCTCCCTCAAACTCAACCATGGCATGCTTATCTTTGAACAACCCCGTTACGAGCATGGAATGCTCCGTTTGGCACCCTTTTCTGGTGATGCCATTTCGACATACCCCTTGAGGATTCCCCTTCCCTTTCGAGAGGATCGTGTTCGCATGTGTCATTGCGATGGCTTGGTTTTCTTCACTGCAGCTTGGGCCAATGTCTGTGTGCTCTGGAACCCTTTACTGCGGAAGCAAAAGTCGTTGACTTTGCCGCGATTCGAGGGTCCTGGATTTCCGGGTAGTGTGATTTTGGTGGATTTTGGATTTGGGGTTGACATGGTAAGTGGTGACCATAAGATTGTTAGGCTTGTGCTTTATGCTGAATGGTATAAGGGTGATTATTTGAAGCATAATTTTTGGACTTCTGAAGTAAAGGTTTATTCTTTTGGTACAAATTCATGGAGAAGGGTTCCTGATTTGCCTTTCAATGATTTAAAGCTTTGTACTCCTTCAATCCATGTTAATGGTGCTCTACACTGGTTGGTTTGTGACAGGGATTCAAGTGAGTCTATCAGATTTGTTGTTGCTTTTGATCTTGCAAATGAAGAATTTCATAACCTTCTTGTTCCAAGTAATTTGGAACATGGGTCTCTCTCGAGTTTGGCTGTTCTGGATGGCTGTCTCTGCTTATGCCTGAATGATAATGCAAAGGCTCGTCAAGAGGTTTGGTTGATGAAGGAGTATGGAGTGCATGATTCTTGGTGTAGGCTTTTGGTTTTTGAAAATTGTGAATTGCCTTGCAGGCCATTAGTTTTATCCAAGGCTAATGCCAAGGTGCTTGTGGAACAGGACTCTAAGAAACTATTTTGGTATGATTACATCAATGAGGAAATTGAAAAGGTCATGATTAGTGATATGCCTTTTGCCTTTCAAACAACTGTCTCTGCTGGAAGCCTTCTTTTGCATGATGGAGATGCTGTAAAGGCTGCTCAATTATAG 1143 0.4261 MTNTMMNESSVRLLPLEIVAEILSWLPVESILRFSCVCKSWYSLISHSQFINLHLSRSLKLNHGMLIFEQPRYEHGMLRLAPFSGDAISTYPLRIPLPFREDRVRMCHCDGLVFFTAAWANVCVLWNPLLRKQKSLTLPRFEGPGFPGSVILVDFGFGVDMVSGDHKIVRLVLYAEWYKGDYLKHNFWTSEVKVYSFGTNSWRRVPDLPFNDLKLCTPSIHVNGALHWLVCDRDSSESIRFVVAFDLANEEFHNLLVPSNLEHGSLSSLAVLDGCLCLCLNDNAKARQEVWLMKEYGVHDSWCRLLVFENCELPCRPLVLSKANAKVLVEQDSKKLFWYDYINEEIEKVMISDMPFAFQTTVSAGSLLLHDGDAVKAAQL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi609g00022 380 SMART fbox_2 14 54 IPR001810 GO:0005515
Sebi609g00022 380 SUPERFAMILY Galactose oxidase, central domain 104 355 IPR011043 -
Sebi609g00022 380 SUPERFAMILY F-box domain 5 60 IPR036047 GO:0005515
Sebi609g00022 380 PANTHER OS09G0372900 PROTEIN-RELATED 14 326 - -
Sebi609g00022 380 Pfam F-box domain 14 47 IPR001810 GO:0005515
Sebi609g00022 380 CDD F-box_AtFBW1-like 12 50 - -
Sebi609g00022 380 Gene3D - 1 50 - -
Sebi609g00022 380 Pfam F-box associated 220 345 IPR006527 -
Sebi609g00022 380 ProSiteProfiles F-box domain profile. 8 53 IPR001810 GO:0005515
Sebi609g00022 380 NCBIfam F-box protein interaction domain 106 332 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi609g00022 Sebi-Chr609 559312 560454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi609g00022 173 309 Carbohydrate Esterase AT1G25141 20.134 2.56e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi609g00022 - - cave:132178594 216.468