Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi608g00018 ATGGCATCATCCAGTTCTTACAATTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAATGCTTGCCAGGTTGCATCTTTGCACCTTACTTCCCACCTGAAGAGCCTCAAAAATTCGCCAACGTCCACAAGATCTTCGGTGCCAGTAATGTGACAAAGCTTCTGAATGAACTCCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCTCGTGTGAGAGACCCCGTTTATGGCTGTGTAGGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAGAGGCTCCAAAAGGAACTTGA 312 0.484 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGCHLFPPETSSEAPKGT 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi608g00018 103 ProSiteProfiles LOB domain profile. 9 103 IPR004883 -
Sebi608g00018 103 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 88 - -
Sebi608g00018 103 Pfam Lateral organ boundaries (LOB) domain 10 88 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi608g00018 Sebi-Chr608 426453 426764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi608g00018 2 87 AS2 family AT5G63090 95.349 1.95e-58 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sebi608g00018 LOB 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi608g00018 - - gmx:100800614 185.652