LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi607g00009	ATGGCACTGGTGATCATGCTTGCTGATTGGGGTGAAGGCTACGGTGGGTTAACAAAGTTGTGCACCACCGGCGGGTTTTTTGTTGCAATCCTCGGACAGGATGAAGATGGAGGTGTGTTTGTATTTGGTGATAATTGTGGTGAGAAGGAAGTGGTTGATGATGAAGGAACTGGAGATAATAGTTTTCATAATGACAATGGTGGTGGTTTTTTTTTCGGTGATGAGAATGGTGGTGGAGTTTTCTTTGTTGGGCCTGATTGGGAAGACAGTAATGAAGATGGTTATGGAGATGAGGGTTGTGGGGAAATAATAGCAATAAGTTGTGAAGATGATATTCTTAACATGGGGGACCTTAGTTTGTTTAGTCTTGTCCAGATAGTGAAGTATGAATTTGCTAGTATTGATGTAGGATATAAATTCTATATGAAATATGCAGAAGCCAATGGATTTGGTATTAGGAAGGGTAGAGGTTTGAGAAAACGAAGAACCTTGGAGAAGTATCAGAAAGAGTTCATGTGTTGTAGAGAAGGTTTCCGTGAAGACCGTGGTCTTAAGATGGAAGAAAGGGTCCGTGAGCCTAGACCTGAAACTAGAAGAATGTCTGAAAGTGATGTTGTCCAAATGAATAACATGATGAAGGTTGGTATTAGGCCACCTAATATTTTTAGCACATTTGCAAGCCAAGCTGGGGGATATGAAAAAATTGGTTTTAGGAAGAAAGACATGTATAATAAGATCAATGAGCAGAGGAGAAAGCTATGTTCTGATGCTAAAGGTGCTATTGAATTCCTTGGTGAGCTTCGATTGATGGACCGTATGATGTACTATGAACACACTGTTGATGCACAAGAACAACCTCGAGGTGTGAGGTCAAGTAATGAGTTTAAATGTGGATCCCTGAGAATGGAGTCAAGAGGTTTACCTTGTGAGCACATAATTGCAGTTTTGTCTCATTTAGTGATAGAAGAGTTACCGGAAATGTTGGTACTTAAGAGGTGGTGCAAGGGTGCTAAGGATGGGTTAGATGAGGATGGTAATTATGCATGGAACGTAGGTAGGACTGCGAGGAGGAATGCACTGTGTGATTTTTACTTTCATATTAGTGATTTTAAGGCTGTTACTATTGAAAAATACAATGTAGAACGGGAGAAACTCCTTGCTGAGTGGAGACAATGCAAGGCTGAGGCAGGAAGTGAAGAGGCAGTTGGTGGGGCAGCTTGCAATGTTGGGAATGACTCTCTTAGGGACCCTGTACGTGCAGCAACCAAAGGCAGTGGTGGGGTGTCCTCTTCTGCTGGCATCAGAGTTAGAAGAAAACAAAATGGTTCTGTATTGGCTTTTCCATTGAGGTACATGCACACGGTTGCGGATGGCGTATGCTTTGAATTGCTGGAAACAGTTTTTATGCGGAAGGTTGTCTGTCTAAAAGAAAACAACATGCATTGA	1446	0.4184	MALVIMLADWGEGYGGLTKLCTTGGFFVAILGQDEDGGVFVFGDNCGEKEVVDDEGTGDNSFHNDNGGGFFFGDENGGGVFFVGPDWEDSNEDGYGDEGCGEIIAISCEDDILNMGDLSLFSLVQIVKYEFASIDVGYKFYMKYAEANGFGIRKGRGLRKRRTLEKYQKEFMCCREGFREDRGLKMEERVREPRPETRRMSESDVVQMNNMMKVGIRPPNIFSTFASQAGGYEKIGFRKKDMYNKINEQRRKLCSDAKGAIEFLGELRLMDRMMYYEHTVDAQEQPRGVRSSNEFKCGSLRMESRGLPCEHIIAVLSHLVIEELPEMLVLKRWCKGAKDGLDEDGNYAWNVGRTARRNALCDFYFHISDFKAVTIEKYNVEREKLLAEWRQCKAEAGSEEAVGGAACNVGNDSLRDPVRAATKGSGGVSSSAGIRVRRKQNGSVLAFPLRYMHTVADGVCFELLETVFMRKVVCLKENNMH	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi607g00009	481	Coils	Coil	375	395	-	-
	Sebi607g00009	481	Pfam	FAR1 DNA-binding domain	139	199	IPR004330	-
	Sebi607g00009	481	PANTHER	OS01G0519700 PROTEIN	125	200	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi607g00009	Sebi-Chr607	171731	175344	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi607g00009		FAR1	1.6e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi607g00009	-		-	tpra:123913749	142.51