Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi606g00051 ATGTCTTCCTCAATTTTTAGTTGCATTCCTTCTGATGTATCACTACATTTCAATAATTGTCCTTTTCTTACCTTTCTAATCATTTTGAAAGGATCTAACACGCTTGGTTTAGTCTGTGCTTTTTACCCAGGAAAGGGAAATCTCTTACTTATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAGTATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGTTCTCGTAGGTCTGCACACCAGGAGGCCGAAAGAGAAGTTTCAAACCTCAATATGAATAAAATGGATTTAGGCTGTAAAATTGAAAACCTCTCACTCAAAACATTTGATATGGAGCTAATCTCCAAATTTAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAAAGGTGTTATGTTTCCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTCGCTTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCAGAACTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACCTCTCATAAGCCTGCGTTCAAAGCATTTGATATACAATCCCTGATTAACAAGATTAATAAGTCCATAGTGGCTCCGTTGCCAACAAAATATTCTGTTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCTGAGCTACTTGGGCACCCACATCTTCAACCTCATGTGCTTAAGATCCATCTCAAAATCAATAACCCCAGGCGAAGTACATTGCCAGGACATTGGCCAGAATCCGACTACAGGAAGAAAACTAGATTTTTGAAGCCAGAAGGCCATCCTGTTTCTATCTCTGGGGATAAGTGGCACTCTTTCAGCAATGATCGCACTTTAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCTCTGTGCTCTACCCTAGAAATAGATTGCACTCCTGAGAATCAAAGATTGGCTGAACTGTGTATTGGAGATAGCCATGACGTGAAGTCAATCTATAAACCAGCTGTTTCCAGAACTTCTAGTATTGCCAAGACTCGAAGACTCACTTCATCAAAAGCTTCTACCACCCCCAAGAAATCAATGGAACCCTCAAAGTCCCGTAAGGAGCTTCCTGTTTCACACAATACCAAACAATCTGTCCCTACAACTCGCAGAGCATCATTGCCATTGCCAAGAAGTTGTGCCATTCAGCAGCCTCCTCGTAGGCCCAGTATCGGTTTACTTGGCCGTGTAAATTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAAGATAGCAGAATTCCCATTAGCATCCTATGAAGATCAATTGTTTCCCATCAATAGATCTTCACCAACCTCTGTGCAGGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAGTCAAGGTATGTGACAGAGCCTACATCAGACCTAGTTGTACGGATGCTTGGCAGGGAATCAAGCGTAGCATGATCAAACAAAATGACGATGGCAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCAACAACTCCTCAGACTTGCACCGCCGACAGTTTGATACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAGGGGTTGCTTGAATTTAGTGCAAGATTACTACATCAGGAAAGGTATGATGAACTTGGGGTTTTGTTAAAACCGTTTGGGCCTGGGAAAGCTTCCCCAAGGGAAACAGCTATTTGGTTGAGCAAGAGTTTCAAAGAAAACACTTTCAACCGGGAACAATCTGCCTAA 2103 0.418 MSSSIFSCIPSDVSLHFNNCPFLTFLIILKGSNTLGLVCAFYPGKGNLLLIDDMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEAEREVSNLNMNKMDLGCKIENLSLKTFDMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAKGVMFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQSLINKINKSIVAPLPTKYSVAFRGLVKSMLRKNPELRPSAAELLGHPHLQPHVLKIHLKINNPRRSTLPGHWPESDYRKKTRFLKPEGHPVSISGDKWHSFSNDRTLNPSVSGAEQDSLCSTLEIDCTPENQRLAELCIGDSHDVKSIYKPAVSRTSSIAKTRRLTSSKASTTPKKSMEPSKSRKELPVSHNTKQSVPTTRRASLPLPRSCAIQQPPRRPSIGLLGRVNSPNISVNSPRIDKIAEFPLASYEDQLFPINRSSPTSVQGSSGSPPCGNDSTLIDKCTVKVCDRAYIRPSCTDAWQGIKRSMIKQNDDGKSGSSDQNATAGASSNNSSDLHRRQFDTSSFQQRAEALEGLLEFSARLLHQERYDELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQSA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi606g00051 700 CDD STKc_Nek 56 339 - -
Sebi606g00051 700 MobiDBLite consensus disorder prediction 605 630 - -
Sebi606g00051 700 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Sebi606g00051 700 Pfam Protein kinase domain 133 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi606g00051 700 Gene3D Phosphorylase Kinase; domain 1 44 164 - -
Sebi606g00051 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Sebi606g00051 700 MobiDBLite consensus disorder prediction 446 496 - -
Sebi606g00051 700 FunFam Serine/threonine-protein kinase Nek3 167 413 - -
Sebi606g00051 700 ProSiteProfiles Protein kinase domain profile. 57 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi606g00051 700 MobiDBLite consensus disorder prediction 602 630 - -
Sebi606g00051 700 Coils Coil 102 122 - -
Sebi606g00051 700 SUPERFAMILY Protein kinase-like (PK-like) 52 365 IPR011009 -
Sebi606g00051 700 SMART serkin_6 57 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi606g00051 700 Gene3D Transferase(Phosphotransferase) domain 1 165 354 - -
Sebi606g00051 700 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 54 650 - -
Sebi606g00051 700 MobiDBLite consensus disorder prediction 446 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi606g00051 Sebi-Chr606 428173 433947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi606g00051 63 340 MAP Kinase Kinase Kinase AT1G53570 28.929 2.72e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Sebi606g00051 Pkinase 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi606g00051 K08857 - gmx:100796019 1043.11