Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi606g00047 ATGTTGATTCAGAGCATACCAAAGTCTTTCAATAAGTTCTTCAATGGAACCACACCATGCAAGGTCACTCTTAAGGATCAAGACAGAAATCCTTGGAATATTTGTTTGGAGAAAATCGACGATCGCTTGGTTTTTAAAAACGGGTGGCGGCAATTTGCCAGGGATAAGTGTTTAGAAGAAAGAGACTTTTTGGTTTTTGAGTATGATGGCAAGTCAACGTTTTATGTGAAGATCTTTTCCAAAAGTGGATGCAGGATAGAAGCTGAAAATCTTGGAAAAACTGTTCCCATTGTGATTTTGGAAGAAAATTCTGCTCAGAATTGTACAAAAGTTCAGCGGGGTTATAAAAGGAAACATCCACCAACACCCTCCAAAATAAATGACAACAAATCAGATTCAGAGGGTCCATCTCCATCTCAGAGAAAACCAAAAAGAACTTATGAAGAAAATGGTAACCACGTTGAGAGGAAGGCACTTGGTCCATCTAGGAGAAAACCAAAAAGAATTTACGAAGAAAATGGTAATCACGTTGAGAAGAAGGCACTTGGTCCGGCAAAGTGTGTTCCCCCAAAGAACACTCATTTTGAGGAAGTTCCTAGAAGAATACTGAAGCAATTGAACATCAACCAGATATCAAAGATAAGTCTGAGAGATGAGAATAACAAACTGTGGCCGGTGGCTATCAGTAAAAAGCAGCAGGGCCGTCATTTTTTTGCCGACGGGTGGTATGATTTTCGGCAAGCTCACAATATTAAAGAAGGCCACCGTTGTGATTTTCAGTTTGTTATTGGCAAAGCAAATGTGGTCAAAGAATTGCGTGTGCGTGTGCTTCCACCTTCAAAATCAAAATGCCCATAG 858 0.3998 MLIQSIPKSFNKFFNGTTPCKVTLKDQDRNPWNICLEKIDDRLVFKNGWRQFARDKCLEERDFLVFEYDGKSTFYVKIFSKSGCRIEAENLGKTVPIVILEENSAQNCTKVQRGYKRKHPPTPSKINDNKSDSEGPSPSQRKPKRTYEENGNHVERKALGPSRRKPKRIYEENGNHVEKKALGPAKCVPPKNTHFEEVPRRILKQLNINQISKISLRDENNKLWPVAISKKQQGRHFFADGWYDFRQAHNIKEGHRCDFQFVIGKANVVKELRVRVLPPSKSKCP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi606g00047 285 Gene3D - 3 84 IPR015300 -
Sebi606g00047 285 Gene3D - 185 279 IPR015300 -
Sebi606g00047 285 PANTHER B3 DOMAIN-CONTAINING 5 264 - -
Sebi606g00047 285 MobiDBLite consensus disorder prediction 135 169 - -
Sebi606g00047 285 SUPERFAMILY DNA-binding pseudobarrel domain 5 84 IPR015300 -
Sebi606g00047 285 ProSiteProfiles B3 DNA-binding domain profile. 198 280 IPR003340 GO:0003677
Sebi606g00047 285 MobiDBLite consensus disorder prediction 110 169 - -
Sebi606g00047 285 SMART B3_2 187 280 IPR003340 GO:0003677
Sebi606g00047 285 SMART B3_2 1 82 IPR003340 GO:0003677
Sebi606g00047 285 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Sebi606g00047 285 SUPERFAMILY DNA-binding pseudobarrel domain 195 262 IPR015300 -
Sebi606g00047 285 CDD B3_DNA 198 278 IPR003340 GO:0003677
Sebi606g00047 285 CDD B3_DNA 5 80 IPR003340 GO:0003677
Sebi606g00047 285 Pfam B3 DNA binding domain 198 264 IPR003340 GO:0003677
Sebi606g00047 285 Pfam B3 DNA binding domain 5 81 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi606g00047 Sebi-Chr606 412139 413416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi606g00047 6 283 B3 DNA Binding Superfamily AT5G66980 28.754 2.17e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi606g00047 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi606g00047 - - gmx:102669908 258.455