Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi606g00036 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTAAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGAGTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGTTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTTCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCATGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAGAGATAAGAAATTCCTTTTTAAAGTGCAAGTTATGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTATGTAGCATTAATTCAAGACAACTCTGA 1353 0.3511 MASRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIKFKKEGKPCNYVVIELENIEGGLKLRCTLWEEYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIVDLKEVTQNSVFVTIGTVKDIESEYNWFYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLHVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFRDKKFLFKVQVMIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVCSINSRQL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi606g00036 450 Gene3D - 116 255 IPR012340 -
Sebi606g00036 450 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi606g00036 450 Gene3D - 268 432 IPR012340 -
Sebi606g00036 450 CDD RPA1_DBD_A_like 21 109 - -
Sebi606g00036 450 SUPERFAMILY Nucleic acid-binding proteins 281 412 IPR012340 -
Sebi606g00036 450 CDD RPA1_DBD_C 289 405 IPR047192 -
Sebi606g00036 450 Gene3D - 8 115 IPR012340 -
Sebi606g00036 450 PANTHER OS03G0429900 PROTEIN 19 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi606g00036 450 CDD RPA1_DBD_B_like 142 244 - -
Sebi606g00036 450 Pfam Replication factor-A C terminal domain 290 406 IPR013955 -
Sebi606g00036 450 SUPERFAMILY Nucleic acid-binding proteins 122 245 IPR012340 -
Sebi606g00036 450 SUPERFAMILY Nucleic acid-binding proteins 16 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi606g00036 Sebi-Chr606 338631 340808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi606g00036 20 412 Core DNA Replication Machinery Family AT5G08020 23.358 5.31e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi606g00036 - - adu:107477146 444.891