Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi606g00021 ATGGCCCCCGACGCTTCCGATGCACTTGCAGTGAGGCAGAAAGTTCAACTATTTCTCAACGCTGCTCGTACTGGCAATCTCGATCTCTTAAAGAATTTGGCGGCGCAGTTGGATGAGGGCAAGGATTTAACTAAAACAGTAGAAGCAATCAAAGATGCTAACAAGCGAGGAGCATTGCATTTTGCAGCTCGTGAAGGCCAGAATGAGGTTTGCAAATACCTCTTACAGGATTTGAAGCTCCATGTTGATTCTAAAGATGACGATGGTGAGACTGCTCTCATTCATGCTGCTCGTCAGGGACACACAGCCACTGCTAAATTTCTGATTGACCATGGTGCCGATCCTACTATAGCTAGAGATACTGAGCTGCTTGAGTATTTGCTGTCCAGAGGAGTTAATCCTGATCTAGAAAGTGATGCAGGAACACCTTTGGTTTGGGCTGCTGGTCATGCCCAGCAAGCTGCTGTCAGTGTTCTATTAGAACATGGTGCAAATCCTAATGCTGAAACTGATGATGGTATTACCCCACTCCTTTCATCCGTGGCAGCTGGTTCTTTGGCATGTTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTAAATATTAGCGCTGGTGGAGCAACACCTTTGCACATTGCAGCTGATAATGGGAGCCTAGAACTTATAAACTGCTTATTGAAAGCTGGAGCTGATCCTAATATCTCCGATGAGGATGGTGTTAAGCCCATACAAGTTGCAGCTGCAAGGGGTAATCGAGTAGCCGTTGAAATACTATTCCCCTTGACGTCCAAAATTGATACTGTTCCAACTTGGACTATTGATGGGATACTTGAGTACATGCAATCTGAAACTAAAAAGCAGCAGGATGAATTGGTATATGCTAAAGAAACTAATCAGCCCAAGGATGCTATTCGGGAGCAAAATATACCTGAGGTGGAACCTGAAGCAAAAAGGAGGGCAGCGGAAGCTAAATCAAGAGGGGACGAGGCTTTTAAAAGGAAAAACTATCTTATGGCTATAGATTCCTATACACAAGCTCAGATTTCATGCTTCCTATTCGTTATGTGTCTGGGTGTCTCAATGATGTTTCTATTCAGTGTCTACTGGACATGCACTGCACATGCAATTGATCTGAATCCCACTGATGCTACGTTGCTATCCAATAGGAGTCTTTGTTGGATTAGGCTGGGTCAAGCTGATCATGCTTTAGCTGATGCAAAGGCCTGCAGAGCATTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTTTGCGTAAGTTTGATGAAGCTGCAAATGCTTTCTATGAGGGAGTAACACTTGATCCTGAGAATAAGGAGCTTGTAAATGCATTCAGGGAAGCTGTTGAAGCTGGAAGGAAATTTCATGGCACAGCTGAGAATAAATCATAG 1416 0.4421 MAPDASDALAVRQKVQLFLNAARTGNLDLLKNLAAQLDEGKDLTKTVEAIKDANKRGALHFAAREGQNEVCKYLLQDLKLHVDSKDDDGETALIHAARQGHTATAKFLIDHGADPTIARDTELLEYLLSRGVNPDLESDAGTPLVWAAGHAQQAAVSVLLEHGANPNAETDDGITPLLSSVAAGSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELINCLLKAGADPNISDEDGVKPIQVAAARGNRVAVEILFPLTSKIDTVPTWTIDGILEYMQSETKKQQDELVYAKETNQPKDAIREQNIPEVEPEAKRRAAEAKSRGDEAFKRKNYLMAIDSYTQAQISCFLFVMCLGVSMMFLFSVYWTCTAHAIDLNPTDATLLSNRSLCWIRLGQADHALADAKACRALRPDWPKACYREGAALRKFDEAANAFYEGVTLDPENKELVNAFREAVEAGRKFHGTAENKS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi606g00021 471 PRINTS Ankyrin repeat signature 155 169 IPR002110 GO:0005515
Sebi606g00021 471 PRINTS Ankyrin repeat signature 89 104 IPR002110 GO:0005515
Sebi606g00021 471 Gene3D Tetratricopeptide repeat domain 310 468 IPR011990 GO:0005515
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat region circular profile. 172 201 - -
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat region circular profile. 204 236 - -
Sebi606g00021 471 Gene3D - 175 259 IPR036770 -
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat profile. 204 236 IPR002110 GO:0005515
Sebi606g00021 471 SUPERFAMILY TPR-like 373 456 IPR011990 GO:0005515
Sebi606g00021 471 Pfam Ankyrin repeat 205 235 IPR002110 GO:0005515
Sebi606g00021 471 SUPERFAMILY Ankyrin repeat 19 259 IPR036770 -
Sebi606g00021 471 Gene3D - 7 119 IPR036770 -
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Sebi606g00021 471 Gene3D - 120 174 IPR036770 -
Sebi606g00021 471 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Sebi606g00021 471 Pfam Ankyrin repeats (3 copies) 121 202 IPR002110 GO:0005515
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Sebi606g00021 471 SMART ANK_2a 139 168 IPR002110 GO:0005515
Sebi606g00021 471 SMART ANK_2a 204 233 IPR002110 GO:0005515
Sebi606g00021 471 SMART ANK_2a 88 117 IPR002110 GO:0005515
Sebi606g00021 471 SMART ANK_2a 172 201 IPR002110 GO:0005515
Sebi606g00021 471 SMART ANK_2a 237 266 IPR002110 GO:0005515
Sebi606g00021 471 SMART ANK_2a 54 84 IPR002110 GO:0005515
Sebi606g00021 471 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515
Sebi606g00021 471 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi606g00021 Sebi-Chr606 208387 213992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi606g00021 120 291 Ion Channels AT2G25600 28.972 2.06e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi606g00021 - - gmx:100793914 734.947