Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi606g00006 ATGTTTGGATGGGAGTGCTTTTCCTGGAATAGTGTCCCTGATTCATACTTATCTGAGCCAGAGCCCTTCTCTCTGCCTGCACCTCTTCCAAAATGGCCACAAGGTAGTGGTTTTGCTAGTGGAAGAATAAGCCTTGGAAGAATACAAGTTTCACAAGTAACCAAGTTTGAAAGAGTTTGGAGCTGCACAAATTCACATGGTAAACCACATGGTTTCATATTTTACAGACCTTTGGAGATTCCAGATGGATTTTTCTGCCTAGGTCACTACTGCCAGTCCAATGAGCAGCCATTAAGAGGACATGTTCTTGTGGCTCGTGAAATTTCTTCTTCTGAACCTGAAGCTGATCATAGCCATGGTTCCATGTTAGAATCTCCAGCTCTGAGAAAGCCAATTAACTACTCTCTAATATGGAGTGCTGATTCACCACATGATGGATGTGGTTATTTTTGGCTGCCAAATCCTCCAGTGGGTTACAAAGCCATGGGTATAATAGTTACTAGTAAACCAGATGAACCTGAAGTTGAAGAAGTTAGATGTCTGAGAGAAGATTTGACAGAAAATTGGACATTCTTCTGCAGTACCTATTCTGATTCTAAACAAGTGGAAGATATTGCTTGCTTGAAGAATCTTGATTCCACCTTACATGCAATGCCAAATATAGACCAAATTCATGCACTTATCCATCATTATGGACCCACTGTATACTTCCACCCTGATGAAATATACCTTCCATCATCAGTGCAATGGTTTTTTAAAAATGGTGCACTTTTGTATTCAAGAGGCAGTGAGAAGGGTAAAGCTATAGATTATCAAGGCTCAAACTTACCTAGTGGAGGAACAAATGATGGTGCTTTTTGGATTGATTTGCCTAGTGATGAAGATGCTAGAAATAATCTTAAGAAGGGGAACATAGAGAGTGCAGAACTCTATGTTCATGTTAAACCAGCATTGGGAGGAACATTTACTGATATTGCCATTTGGGTATTTTGTCCCTTCAATGGACCTGCTATCCTTAAAGTGGGATTAGTGAACATTGAAATGAATAAGATAGGGGAACATGTTGGTGACTGGGAGCACTTCACACTTCGTGTGAGCAACTTCACTGGAGAGCTATGGTCTGTGTTTTTTTCTCAGCATAGTGGAGGAGAATGGGTGAATGCATATAATTTGGAGTTTATTGATGGAAATAAACCAGTTGTGTATTCATCAAGACATGGCCATGCAAGTTTCCCTCATCCTGGGACTTACCTTCAGGGACCTTCCAAACTTGGAATAGGAGTAAGGAACGAAGCAGCTAGAAGTAAACTTAGAGTGGATTCAAGCATCAGATATCAGATTGTTGCGGCTGAGTATGTTGATGTTGGTGGTGGGGCTATTAGAGAACCATGTTGGTTGCAGTATATGAGAGAGTGGGGTCCTAGCATTGTGTATGATTCACGTTCTGAAATAGACAAGTTAATAGATCTGCTTCCAGTGTTTGTTAGATTTTCTGTGGAGAACTTAGTTGAATTGTTTCCAACAGAGCTTTATGGTGAGGAGGGACCAACTGGTCCAAAAGGGAAGGCCAATTGGGAAACCATCAATACGGTCGCTGGTCGCAGGGGACCTCGCGAAGCAAAAGAGGCCGTTGGGCGCCACGGTCTTAGTGCTGAACAGGAAGGAATAAAAGTGAATCCCATTGAACTGAGTCACTTTGTGGACTTCATCAAACAAAATAAACTCCAGACAGAGAGCTTCATTATTGGGTCCAATCAGTACATGGTCACGTCAATTCACGAGAATTGGTTTAGTGCAAGGTGCATAAACACATCCAAGCCTGGTGGTGAAGGTGCAATTGTCATGCAAACAGCAGCATATATCTTGGTTGCTCTGTATGAAGGTTCCATTGGTCCGGCATCTCGTGCTATGGCAGCTGCTGATCAGTTAACTTGGCAGTTAGGAAGAAAAAATCTTTAG 1959 0.4196 MFGWECFSWNSVPDSYLSEPEPFSLPAPLPKWPQGSGFASGRISLGRIQVSQVTKFERVWSCTNSHGKPHGFIFYRPLEIPDGFFCLGHYCQSNEQPLRGHVLVAREISSSEPEADHSHGSMLESPALRKPINYSLIWSADSPHDGCGYFWLPNPPVGYKAMGIIVTSKPDEPEVEEVRCLREDLTENWTFFCSTYSDSKQVEDIACLKNLDSTLHAMPNIDQIHALIHHYGPTVYFHPDEIYLPSSVQWFFKNGALLYSRGSEKGKAIDYQGSNLPSGGTNDGAFWIDLPSDEDARNNLKKGNIESAELYVHVKPALGGTFTDIAIWVFCPFNGPAILKVGLVNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSQHSGGEWVNAYNLEFIDGNKPVVYSSRHGHASFPHPGTYLQGPSKLGIGVRNEAARSKLRVDSSIRYQIVAAEYVDVGGGAIREPCWLQYMREWGPSIVYDSRSEIDKLIDLLPVFVRFSVENLVELFPTELYGEEGPTGPKGKANWETINTVAGRRGPREAKEAVGRHGLSAEQEGIKVNPIELSHFVDFIKQNKLQTESFIIGSNQYMVTSIHENWFSARCINTSKPGGEGAIVMQTAAYILVALYEGSIGPASRAMAAADQLTWQLGRKNL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi606g00006 652 Gene3D Dynein light chain 2a, cytoplasmic 542 651 - -
Sebi606g00006 652 Pfam Vacuolar protein sorting-associated protein 62 190 526 IPR009291 -
Sebi606g00006 652 Pfam Vacuolar protein sorting-associated protein 62 20 188 IPR009291 -
Sebi606g00006 652 Pfam Profilin 549 647 IPR005455 GO:0003779
Sebi606g00006 652 PANTHER BNAC01G40110D PROTEIN 190 526 - -
Sebi606g00006 652 SUPERFAMILY Profilin (actin-binding protein) 550 645 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi606g00006 Sebi-Chr606 49999 57440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi606g00006 551 652 Carbohydrate Esterase AT4G19410 66.667 1.75e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi606g00006 - - cave:132171063 839.336