Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi603g00021 ATGAGGTGGGATCTCTTTGAGTGCTGCTTCACTAACTGTTCTTCTGACACAATTCCAATTCCAAAGCGCAGTGAGTTGAAGTGGCGAATCTTCCCCTATAGGCAACTTACAAAAGCCACAAATAATTTTGATGAATGCCATATTCTTGAAAGGAGAGGCTTGGCCATAGTATATTATGGAAAACTTGAGAATGGTCGTGAGATTGCAATCCAGCGCTTTAAGGAAGACAAGCGCCACATATTACAACGGTTCATTGATGAAACTATTATCCTAAATTACATGCCCCACCAAAACCTTGTGTCTATTTACGGGTGTTCCACTCATCACAAGGAATCCCTTCTAGTACATGAATACCTATCCAATGGAACTCTTGCTGCTCATCTTCAAGGCACAATAGCAGAAAGCAGAACATGGTATTGGCTTACCCGATTGAATATTGCCATTGATATTGCAAATGCATTGGACTATCTTCACTATAATGGCATCATACACCGTGATGTAAAGTCCAGAAATATTCTCCTTGATATGAACTTTGGTGCTAAAGTTGCTAACTTCCATTTATCATGGAAGCTTCCGGAGGGAGTTTCTGTTGATAACACCCATGTTACAAGTGATATAATAGGAACATGTGGTTATATAGACCCAGATTATGTGTCAAAAGGCTTCCTTAATGTAAAAAATGATGTTTATAGTTTTGGGGTTGTGTTGTGTGAGCTTATGTCATCAAAGCTTGCAGAATATTGGGTTCAGAGTGAAGAGAATAGTCTTGCTACCCTTTTCAGCACAAAAGTTGAAAACCAAGCTTTGTTGGAGCTTTTAGATCCCAGACTCAACTTTCAATCAGACATTAAGATGACACAGATGATTACTGCTACAGCTGAGCTCGCATCTAGGTGCTTGCAATGTCCACTAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGACTCTCAATGGCATAAAGCAAGGGAAATATGAAACAAGCCCGATGAAAGGATTATTCATGTCTTATTGTAATGCATATATCTCAGCTTTCAAGATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACCATTTTAACACTTGCCTTGGAAAGGGAGGGTTCGGCACGGTCTACTACGGAAAACTTCAAGATGGGCGAGAGGTTGCAATAAAACGTTTCCATGAGGAGACAGACAAAACCATTAAGCAATTCATGAAAGAAATTGAGATCTTATGTCTCTTGAAACATCAAAATCTGGTTTCACTCTATGGTTGCAGTTCTCGTCATAGCATCAAACACATGCTAGTGTACGAGTACATCTCCAATGACACTCTCTCTAAGCATCTTCATGAATCTTCTTGTGGTAAACTATCATGGCCTACTAGATTAAATATCACCATTGAAATTGCAACTGCTTTGTTATATCTCCATGACTCAGGGATCATCCACCGTGACATAAAAGGGAGCAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTAGCAGATTTTGGACTCTCACGGTTTCTTCCGGATTATGTTACTCATGTTTCAACTATGCCAGTAGGAACTCGTGCTTACATAGATCCAGACTATTATGAATCTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTGAGCTCATATCATCCAAACCCCCAAGTTTAATGGAAGGCACAGAGCGCGTTACTCTTGCCCAATTTGCAATGAGTAAAATCTTAAACAAGGCATTGGAGGAGCTAGTGGATCCATGTCTTGGGTTTGATTCTGACAAAAATATAATGGAAATGATAACAGCGGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGCCCCAAGGAACTCAGGCCATCCATGAAACAGGTGTTAGAGACCTTAGAGGGCATAAGGAAAGGGAAATGGGGATTCAATCAGATAACATAG 1926 0.4039 MRWDLFECCFTNCSSDTIPIPKRSELKWRIFPYRQLTKATNNFDECHILERRGLAIVYYGKLENGREIAIQRFKEDKRHILQRFIDETIILNYMPHQNLVSIYGCSTHHKESLLVHEYLSNGTLAAHLQGTIAESRTWYWLTRLNIAIDIANALDYLHYNGIIHRDVKSRNILLDMNFGAKVANFHLSWKLPEGVSVDNTHVTSDIIGTCGYIDPDYVSKGFLNVKNDVYSFGVVLCELMSSKLAEYWVQSEENSLATLFSTKVENQALLELLDPRLNFQSDIKMTQMITATAELASRCLQCPLELRPSMEQVLETLNGIKQGKYETSPMKGLFMSYCNAYISAFKIFHHAELEEATNHFNTCLGKGGFGTVYYGKLQDGREVAIKRFHEETDKTIKQFMKEIEILCLLKHQNLVSLYGCSSRHSIKHMLVYEYISNDTLSKHLHESSCGKLSWPTRLNITIEIATALLYLHDSGIIHRDIKGSNILLDENFTVKVADFGLSRFLPDYVTHVSTMPVGTRAYIDPDYYESGRVSDKSDVYSFGVVLFELISSKPPSLMEGTERVTLAQFAMSKILNKALEELVDPCLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGKWGFNQIT 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi603g00021 641 SUPERFAMILY Protein kinase-like (PK-like) 340 631 IPR011009 -
Sebi603g00021 641 CDD STKc_IRAK 364 630 - -
Sebi603g00021 641 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 345 634 IPR044652 GO:0004672
Sebi603g00021 641 Gene3D Transferase(Phosphotransferase) domain 1 119 334 - -
Sebi603g00021 641 Gene3D Transferase(Phosphotransferase) domain 1 435 636 - -
Sebi603g00021 641 SMART serkin_6 358 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi603g00021 641 SMART serkin_6 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi603g00021 641 ProSiteProfiles Protein kinase domain profile. 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi603g00021 641 Gene3D Phosphorylase Kinase; domain 1 335 434 - -
Sebi603g00021 641 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Sebi603g00021 641 Pfam Protein tyrosine and serine/threonine kinase 58 317 IPR001245 GO:0004672|GO:0006468
Sebi603g00021 641 Pfam Protein tyrosine and serine/threonine kinase 360 627 IPR001245 GO:0004672|GO:0006468
Sebi603g00021 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Sebi603g00021 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Sebi603g00021 641 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Sebi603g00021 641 ProSiteProfiles Protein kinase domain profile. 358 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi603g00021 641 FunFam Wall-associated receptor kinase 3 435 640 - -
Sebi603g00021 641 SUPERFAMILY Protein kinase-like (PK-like) 21 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi603g00021 Sebi-Chr603 547608 549845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi603g00021 347 631 Receptor kinase-like Gene Family AT1G25390 54.983 5.65e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi603g00021 PK_Tyr_Ser-Thr 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi603g00021 - - gsj:114418636 964.526