Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi602g00005 ATGGCCACTGTTGCAACAAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCCAAGCACAAGTCCTTGTTTCTTGGGCAGAGACTTAGAATTAGACCCTCTGATGAGGCACAAAGCTGTGCAAGACTCATCAGTGTCTCAAACCCAAAAGCCTTTCAAGTGTTTGCACTGGGGGCTGAATGGGTTGACTCAGTTCACAACCTTTTTCTGGGTGTTGGGGTAGGGCTACCTTGCACTGTCATGGAGTGTGGGGACATAATCTACAGGAGCACTCTTCCCAAGTCCAATGGATTGACAATTACTGTCCCTGGTGTGATTCTGGCTTTGGGTGCTCTCTCTTATCTCTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAATTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCACTGACCAACAACAACAAGCCCTCTTCAAAGGAAGGTGACCTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGTTCTTCAAAGAAAGCTGCTGAATACTGGCTCATATGGCGGTTTGAAGGGGATGCCACCTTAGCTGATCTTTTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTGATTCTGGGTGAGGTCCAGGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATGAGGCAGCTGTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCTGAAGGGTCTCGGTCATTCAAAATCATTGATCTTGGAGCTGCTGCAGACCTGCGAGTTGGCATCAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATCATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTAGCAACTGCACTTTCCCCTGTCTTATGGCAGTTAAATTTGCCTGACAGATTCGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCAATCCCTGGTTTACGCACTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTAGAGTCTCGATGTAGCCCTGATCTTAGAAGGGGCTTTGAGCTATTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTTCGATACAAAGCAAGGCAAAGGCTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAAATCTGAGGCTGCAGCTCTTACGAGCAACTCAGCAGGATTATGGAGAAGCTGCCAAATGGATTACTTATCTTATGGCAAAATCCGGAACAGAGAAGGATGGTGGATTTACTGAAGCTCAGCTCCAGGAGCTGAGAGAAATTGAACCCAGGAAGAAGGCTAGTGCACAGAGAAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTCTAAAAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1743 0.4429 MATVATRGIGVGVTKLQPHKPKHKSLFLGQRLRIRPSDEAQSCARLISVSNPKAFQVFALGAEWVDSVHNLFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTITVPGVILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLTNNNKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWLIWRFEGDATLADLLQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAIPGLRTDNSLIQFNRQLKRCDYDLVAWRKTVESRCSPDLRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWITYLMAKSGTEKDGGFTEAQLQELREIEPRKKASAQRNALASALKLQRKILKTLNESMDELNRRRKSLWWSRWIPREE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi602g00005 580 SMART serkin_6 150 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi602g00005 580 ProSiteProfiles Protein kinase domain profile. 150 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi602g00005 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 50 555 - -
Sebi602g00005 580 Pfam Protein kinase domain 151 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi602g00005 580 CDD STKc_SNT7_plant 154 470 - -
Sebi602g00005 580 Gene3D Phosphorylase Kinase; domain 1 136 232 - -
Sebi602g00005 580 ProSitePatterns Protein kinases ATP-binding region signature. 156 185 IPR017441 GO:0005524
Sebi602g00005 580 Gene3D Transferase(Phosphotransferase) domain 1 261 474 - -
Sebi602g00005 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Sebi602g00005 580 Coils Coil 546 566 - -
Sebi602g00005 580 FunFam Serine/threonine-protein kinase STN7, chloroplastic 261 475 - -
Sebi602g00005 580 SUPERFAMILY Protein kinase-like (PK-like) 135 472 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi602g00005 Sebi-Chr602 127819 132648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi602g00005 270 471 Core Cell Cycle Gene Families AT2G38620 31.455 1.99e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sebi602g00005 Pkinase 9.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi602g00005 - - gmx:100778588 996.112