Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi602g00004 ATGAACAGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCATCAGGAGGGTGTGATCCCGATAAAGTTATATGGAAAAGCAATCCTTCCAAGGCTTGCCCAAATTGTCAACATGCTATTGACAACAATGATGTAGCACAAGATTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAGATTCAAAACCCCATCCTTTCATTGATGAATTTATTACTACTCTTAAAGAGGATGATGGAATTTGTTATACTCACCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAATGCTTCACATTTCTTCCACAGAGCAATTAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAAATAAATGATCAGGATTTTGGTGATGTCCGCTGGCATAAGACTGGAAAGACTAAACCAGTAATCTTGAATGGGGTTCAAAGAGGGTGTAAAAAGATTATGGTTCTGTATATGAGCAACCCTAGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTTGGAACAGAAGAGGATGAAAAGGATGGGGAGTATGTCATCTCTAAAGTGTCTTACCAGCAGCCGCAAGTCAGATCGGGTGATAAAGATGACCATGATGTTCCTGAAGCCACTGAAGCCACAATTGTGAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCTGAGCCTCCTTGTAATGAAATGCAGTATTCAGATCTTGACCTAGGACAAGAAACACATAACATCCCTCAGATGGATTGCTTAGATGAAATTGAAGCTGTTTGTGAGGCACCTGTACAAATTGATCCATCTACGGTAGAAACTCAACATAATGAAGGGATAGATGATAAAGAAAACAATGCTGATGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGAAGCATTGTCCTTGTGTGATGATCTATTTCAAAGCCAGTCTCCCAATAGAGATGGGAAAGATGGAGAACATAAGAACCAACTTGGTCTTTCTGTTTATGCTCAACTAGGACCAGAGCATCTAAAGAAGGATATTGAAGAGTGCCAAAATCTTGTCCTTGACCCTGCAAATCTAGAGAATGATACACCTTCGGAGTTTAGACTAAGTCAGCTGGAATTTGGTTCACAGGATAGCTTTATTTCCTGGGGTTATAGCAAGGCAGTAAACTAA 1266 0.4036 MNRPSWLVDKSRIATKIKSASGGCDPDKVIWKSNPSKACPNCQHAIDNNDVAQDWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLKEDDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKINDQDFGDVRWHKTGKTKPVILNGVQRGCKKIMVLYMSNPRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVSYQQPQVRSGDKDDHDVPEATEATIVKVDPVTPKSVTPEPPCNEMQYSDLDLGQETHNIPQMDCLDEIEAVCEAPVQIDPSTVETQHNEGIDDKENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLFQSQSPNRDGKDGEHKNQLGLSVYAQLGPEHLKKDIEECQNLVLDPANLENDTPSEFRLSQLEFGSQDSFISWGYSKAVN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi602g00004 421 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Sebi602g00004 421 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Sebi602g00004 421 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Sebi602g00004 421 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Sebi602g00004 421 FunFam NAC domain-containing protein 8 67 220 - -
Sebi602g00004 421 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 381 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi602g00004 Sebi-Chr602 107913 112484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi602g00004 14 219 NAC Transcription Factor Family AT1G28470 54.630 4.87e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi602g00004 NAM 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi602g00004 - - gmx:100799488 738.413