Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi601g00025 ATGGGATCTTCCAAAGGAAGAAAATACAGGAACAGCATAAGGCCTAACAGAGTGACAGGATCTGGATTCTGGAAAGCAACAGGGATTGACAAGCCTATATACTGTGTTAAAGAACCCCATGAATGCATTGGCCTTAAGAAATCTTTGGTTTATTACCGTGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTACCACCCAATGGAAAATCAAACAATAATCCACAAGCTAATGATGTTCAAGAAGCTGAAGTGTGGACCCTATGCCGAATATTGAAACGAATCCCGTCATACAAGAAATACGCACCAAATTTGAAAGACTCATCATCATCATCATTAGTGATGACCAACAAGCCAAACCCACTACTAGCTCCAACAACGTTGTCTTACTCATCAAGCTTTTGGAATCATCAGAATGTGGTGGATGATCATGATAATGCTTTTGCAAATGAGAATTGGGATGATCTCAGATCCGTGGTTCAGTTTGCCATTGATCCATCAAAGAAGTTAAAAAATTTCACTGTTCTATGCCTCCTCTCTGATTGTCCTCATCGTCTCCCGCGCTTGTGCTCATCGTTGTCTCGCCATCGTCATCTCTGTCTCCGTATCGTCTACGGTCGTGTCATCTCTTTGGTGTTGTGCGGCTCGCCGTCATTTGTGCCCTCGTTCACGGTTCCGGCGCTGTGTGGCTCTTCGTCTCTGACCCTTCTCTTGGTTGAACCACTCCCACAGTGGCAGCATCCACCTCCACAACTTAATTCAATTGAGATCCCTCCAGTGGCAATTTCATCTCCAACTCCTTCCCCACTATCTCAAGACTCTAACAAATTAAAGCCCCTCTTTCAGCAAGAAAAGGGATCTTGTCCCCTATTCAGCCACTAA 900 0.4478 MGSSKGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSNNNPQANDVQEAEVWTLCRILKRIPSYKKYAPNLKDSSSSSLVMTNKPNPLLAPTTLSYSSSFWNHQNVVDDHDNAFANENWDDLRSVVQFAIDPSKKLKNFTVLCLLSDCPHRLPRLCSSLSRHRHLCLRIVYGRVISLVLCGSPSFVPSFTVPALCGSSSLTLLLVEPLPQWQHPPPQLNSIEIPPVAISSPTPSPLSQDSNKLKPLFQQEKGSCPLFSH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi601g00025 299 Pfam No apical meristem (NAM) protein 5 71 IPR003441 GO:0003677|GO:0006355
Sebi601g00025 299 Pfam Protein of unknown function (DUF1635) 241 281 IPR012862 -
Sebi601g00025 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 142 - -
Sebi601g00025 299 SUPERFAMILY NAC domain 4 99 IPR036093 GO:0003677|GO:0006355
Sebi601g00025 299 Gene3D NAC domain 2 103 IPR036093 GO:0003677|GO:0006355
Sebi601g00025 299 ProSiteProfiles NAC domain profile. 1 100 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi601g00025 Sebi-Chr601 369146 374226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi601g00025 5 105 NAC Transcription Factor Family AT2G43000 69.307 1.08e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi601g00025 NAM 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi601g00025 - - gmx:100784323 261.922