Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi601g00010 ATGGTTGTGTCTCTGTGTTTCTTTTGTATTTTCAGTCTTTACCTTTGGCTCCCTTCGCATTGTGCAAGTTGTGCCGCTGCCTCTGCGTCCCTTTCCGCTACAACTGCCATTGACGATCGGAATCGGTGCTCCTCGGTGGAAATGGTTACGTTCAGGTTTCACCAGTACCAGGTAGTAGGGAGGGCTCTTCCAACTGAAACCGATGAGCATCCTAAGATTTACCGCATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCAAAGTTCTGGTATTTCTTGAGAAAGTTGAAGAAGGTTAAGAAAAGCAACGGGCAAGTGCTAGCCATCAATGAGATTTTTGAGAAAAATCCTACAAAGATTAAGAATTATGGAATTTGGCTGCGCTATCAGAGCCGTACTGGTTATCACAATATGTACAAGGAATACAGAGATACTACTCTAAATGGTGCTGTTGAGGCAATGTACAATGAAATGGCATCTCGTCATAGGGTCAGGTCTCCATGCATCCAGATCATTAAGACTGCCACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAACTCTAAAATCAAGTTCCCTTTGGTGTTCAAGAAGGTTAGACCCCCAACTAGGAAGCTGAAGACAACATACAAAGCATCCAGGCCCAACCTGTTTATGTGA 678 0.4543 MVVSLCFFCIFSLYLWLPSHCASCAAASASLSATTAIDDRNRCSSVEMVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi601g00010 225 SUPERFAMILY RplX-like 118 193 - -
Sebi601g00010 225 PANTHER 60S RIBOSOMAL PROTEIN L18A 50 224 IPR028877 -
Sebi601g00010 225 FunFam 60S ribosomal protein L18a 48 118 - -
Sebi601g00010 225 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 54 175 IPR023573 GO:0003735|GO:0005840|GO:0006412
Sebi601g00010 225 Hamap 50S ribosomal protein L18Ae [rpl18a]. 53 116 IPR028877 -
Sebi601g00010 225 Gene3D - 43 118 - -
Sebi601g00010 225 FunFam 60S ribosomal protein L18a 119 194 - -
Sebi601g00010 225 Gene3D - 119 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi601g00010 Sebi-Chr601 162961 166010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi601g00010 44 225 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 89.011 6.18e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi601g00010 K02882 K22683 cit:102625748 365.155