Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi601g00002 ATGCTTCCTTTCCAGCTTGTCTGGTCCTGCCCTGCTACTCAAGTATTCCTGCGCCTGTATATGCACATTGAGTGTCTTGTCGGTGTCAAAAAGAAGTGTGAAACCTGTTGCTTCTTTGTGTGCTCAAGTAGAAGATCCAGGACCAGGAGGCTAGCTACCTTAGATCAACACAAAGCAACCGATTATGTCATCCAGCAATTCTCTGAATGTGGAATTGTCAAAGAAGACTTCATTTTTGGGTCTGAAAAGATGGGTTTTGATTGGGATAGTCTAAGAGATCTCTGGGACAAGTACTCTGTATCTCAAATACCAAATGTCTCAAAAGATATCAATGTCGACAAGGTTGGAGCGCAGAATTCTCATGTTCAACAAGAAAATGTGTTTATTCCTGTTCATGATAAGGCGAATGATAATATTCAGACAAGTTCACTCTCAGGGGAAGAAGGAAGCTCTGGGAATGTTAAGAAGCAGTCTACATTATCATATGGAGGACTGGCGACTACCTCTCCTTTAATTGGCTTGCCGGAATTTTCTCATCTTGGGGGACAGGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGTCATGTTAGGCATAAGCATCTTGTGCGCCTGCTCGGATATTGTGTAGAAGGTGTTCACAGGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTTATTCACCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTAATGGGGACCTTTGGTTATGTGGCACCGGAATATGCTAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTTATGCTGGAAGCGGTTACTGGAAGGGACCCTGTAGACTATGCACGTCCTGCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGGCAAGGAGGGCTGAGGAAGTTGTGGACTCAAGCCTCGAAGTTAAACCATCAGCGCGTGCTTTAAAACGTTCCCTTCTCGTTGCACTTAGGTGTATTGATCCTGATGCAGACAAGAGACCCAAAATGAGTCAAGTTGTAAGGATGCTCGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAGGAGCGGCACTAGCAGCGTGGAAATTGAAGCAGTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGGGGAATTCTGAAAGCCATGTGCCTGAAACAACTCAAGGATAG 1287 0.4343 MLPFQLVWSCPATQVFLRLYMHIECLVGVKKKCETCCFFVCSSRRSRTRRLATLDQHKATDYVIQQFSECGIVKEDFIFGSEKMGFDWDSLRDLWDKYSVSQIPNVSKDINVDKVGAQNSHVQQENVFIPVHDKANDNIQTSSLSGEEGSSGNVKKQSTLSYGGLATTSPLIGLPEFSHLGGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLMLEAVTGRDPVDYARPANEVNLVEWLKMMVGARRAEEVVDSSLEVKPSARALKRSLLVALRCIDPDADKRPKMSQVVRMLEADEYPFREDRRNRRSGTSSVEIEAVKDISGPSDAEKVGNSESHVPETTQG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi601g00002 428 ProSiteProfiles Protein kinase domain profile. 73 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi601g00002 428 FunFam Putative receptor-like serine/threonine-protein kinase 182 392 - -
Sebi601g00002 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Sebi601g00002 428 Gene3D Transferase(Phosphotransferase) domain 1 216 405 - -
Sebi601g00002 428 Gene3D Phosphorylase Kinase; domain 1 117 215 - -
Sebi601g00002 428 MobiDBLite consensus disorder prediction 384 428 - -
Sebi601g00002 428 Pfam Protein kinase domain 217 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi601g00002 428 PANTHER OS01G0323000 PROTEIN 172 217 - -
Sebi601g00002 428 SUPERFAMILY Protein kinase-like (PK-like) 183 379 IPR011009 -
Sebi601g00002 428 SMART serkin_6 154 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi601g00002 Sebi-Chr601 48320 52310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi601g00002 162 380 Trihelix Transcription Factor Family AT1G70460 41.985 1.48e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi601g00002 Pkinase 7.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi601g00002 - - gmx:100778444 529.25