Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi600g00044 ATGCGGGTTCAAAGATATTCCAATTGGCAGCTAGTTTCTACCACAGTCAATAGTGCTCTTGGGTTGGTGCATTTGTTTTTAGGCATTTGGGTTTTAGAGGAGAAGTTGAGGAAAAGCCAAACTGCATTGCCTCTTAATTTGTGGTTGCTAGAATTCTTTCAGGGAGTAACATGGTTGTTAGTGGGTTTGACAATAAGTCTTAAGTCGAAAGAACTTCCAAGAACATGGTTAAGGCTTTTTTCTATTCTAATCTTCTTGGTTTCTGGTATTTTCTGTGCTTTATCCTTGTTTTATGCAAATAACAGTAGAGAACTGTCTCTCAAGGTAGCTTTAGATGTTCTCTCTTTTCCAGGGGCAATATTATTGCTATTATGTACATACAAGGAATCTAAGTATAGGGACACTGACAGAGAAATTGATGAAAGCCTTTACACACCTTTAAATGATGAGTCCAATAAGAATGATTCTATTAGCCATGTAACCTTATTTGCCAATGCTGGATTCTTCAGTAAGATGTCATTTTGGTGGCTGAATCCATTGATGAAGAGGGGTAAAGAGAAAACACTTCAGGATGAAGATGTCCCAAAGTTGCGGGAGGAAGATAGAGCAGAAAGTTGTTATTTGCAGTTTCTAGACCACTTGAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCAGTTTTGAGGACAATAATTTTATGCCACCGAAGAGAAATCTTGATATCAGGATTCTTTGCATTGCTCAAGGTACTTTCTCTGTCTTCTGGACCTTTGCTTCTGAATTCCTTCATACTGGTAGCTGAGGGTAATGAGAGTTTCAAATACGAAGGTTTTGTATTGGCCATATCACTTTTCCTTGCAAAAATCATAGAATCCCTATCACAAAGGCAGTGGTACTTCCGCTCCAGACTTATTGGTGTGAAAGTTAGGTCACTGCTAACTGCAGCCATTTATGGAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACAACTAGCTTCCAGCTATGTATCTCATTGGTAATACTTTTTAATGCTGTTGGGTTAGCTACAATTGCCTCCTTGGTGGTGATAGTTATCACAGTGCTTTGCAATACCCCACTTGCAAAGTTACAACACAAGTTTCAGACCAAACTAATGGTGGCACAGGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAGTTGTATGCATGGGAAACCAACTTCAAAAATGTTATAGAAGGATTAAGGAATGTGGAGCTCAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAACACATTTCTTTTTTGGTCCTCACCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCGTGTTACTTTCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCAATTAGAACCATCCCTGACGTTATTGGGGTGGTCATTCAGGCAAAAGTTGCATTCGCCCGTATTGTAAAATTCATGGAGGCACCTGAACTGCAGAATGCAAATGTCAAGAAGAGGTGTTTTAATGACAATATGAGGGGCTCGATTTCAATCAAGTCTGCTGATTTTTTATGGGAAGATAATTTACCAAAGCCAACACTAAGAAACATAAATTTGGATGTTAGACCTGGACAAAAGGTAGCTATTTGTGGAGAGGTCGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCAGGGGACAATTGATGTTTATGGGAAATTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGAACAATAAGGGAAAATATATTGTTTGGATCAGCTATGGATGCTCAAAAATATCAGGAAACCCTTCATAGGTCTTCACTAGTGAAGGACCTTGAGTTATTTCCCTATGGGGATCTCACTGAAATAGGAGAGAGAGGGGTTAACCTGAGTGGAGGGCAGAAACAACGAATTCAACTTGCCCGTGCTCTCTATCAGAGTGCTGATATATATCTCTTGGATGATCCATTTAGTGCCGTTGATGCACAAACTGCCACAAATTTGTTTAAGGAATACATTATGGAAGGACTTGCTGGGAAGACAGTTTTGCTCGTGACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCAGTTTTGTTGATGTCAGATGGGGAAATCATACAAGCTGCTCCTTATCACCATTTGTTGACATCAAGCCAAGAATTTCAGGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGATCGGCTTGTGGATGTTACTTCTTCCAAGAGACATTCGAATTGTGCTAGAGAGATCAGGAAAACATATGTGGAGAAGGGGAAGCCGAGTGAAGCATTAAAAGGTGATCAATTGATTAAGCAAGAAGAAAGAGAGACAGGAGACCAAGGGTTCAAGCCTTACTTACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCCATTGCATCTCTTTCTCACCTTATATTTGTTATTGGCCAAATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCAACTACTGAACTCCCTTTTTCGAGCACCTATGTCATTTTATGACTCCACACCTTTGGGACGGATACTTAGTAGGGTCTCCTCTGATCTCAGCATTGTTGATCTTGATGTCCCATTTGGCCTTCTTTTTGCCGTGGGAGCTACTACGAATTGTTATGCCAGTCTTACAGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATATATTTTGCAATTCGCTTGCAGAGATATTACTTCGCTTCTGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGGGGAGGAAGATCGATTTTTCGCAAAGAATTTTGATCTAATTGATGTCAATGCTAGTCCTTTCTTCCATAGTTTTGCAGCAAATGAGTGGCTGATTCAACGGTTAGAAACAGTCAGTGCAGTTGTCCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCACCTGGGACATTCACCTCCGGATTTATTGGCATGGCTCTCTCTTATGGTCTTTCACTTAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCAATATATCAAATTATATAATATCAGTGGAGAGGCTAAATCAATATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTAAATTGGCCAGTTGCTGGTAGAGTAGAAATATATGAACTGCAG 3393 0.4005 MRVQRYSNWQLVSTTVNSALGLVHLFLGIWVLEEKLRKSQTALPLNLWLLEFFQGVTWLLVGLTISLKSKELPRTWLRLFSILIFLVSGIFCALSLFYANNSRELSLKVALDVLSFPGAILLLLCTYKESKYRDTDREIDESLYTPLNDESNKNDSISHVTLFANAGFFSKMSFWWLNPLMKRGKEKTLQDEDVPKLREEDRAESCYLQFLDHLNKQKQKDPSSQPSVLRTIILCHRREILISGFFALLKVLSLSSGPLLLNSFILVAEGNESFKYEGFVLAISLFLAKIIESLSQRQWYFRSRLIGVKVRSLLTAAIYGKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFNAVGLATIASLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLKASSEALVNMKVLKLYAWETNFKNVIEGLRNVELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFMEAPELQNANVKKRCFNDNMRGSISIKSADFLWEDNLPKPTLRNINLDVRPGQKVAICGEVGSGKSTLLAAILREVPNTQGTIDVYGKFAYVSQTAWIQTGTIRENILFGSAMDAQKYQETLHRSSLVKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQSADIYLLDDPFSAVDAQTATNLFKEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYHHLLTSSQEFQDLVNAHKETAGSDRLVDVTSSKRHSNCAREIRKTYVEKGKPSEALKGDQLIKQEERETGDQGFKPYLQYLNQNKGYIYFSIASLSHLIFVIGQILQNSWMAANVDNPQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATTNCYASLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFGEEDRFFAKNFDLIDVNASPFFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGTFTSGFIGMALSYGLSLNNSLVFSIQNQCNISNYIISVERLNQYMHIPSEAPEVIEGNRPPVNWPVAGRVEIYELQ 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi600g00044 1131 FunFam ABC transporter C family member 5 880 1106 - -
Sebi600g00044 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 779 IPR027417 -
Sebi600g00044 1131 CDD ABC_6TM_ABCC_D2 850 1100 IPR044726 GO:0140359
Sebi600g00044 1131 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 241 521 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi600g00044 1131 FunFam ABC transporter C family member 10 224 537 - -
Sebi600g00044 1131 FunFam ABC transporter C family member 10 538 792 - -
Sebi600g00044 1131 CDD ABCC_MRP_domain1 556 756 - -
Sebi600g00044 1131 Gene3D ABC transporter type 1, transmembrane domain 212 538 IPR036640 GO:0005524|GO:0016020
Sebi600g00044 1131 Gene3D ABC transporter type 1, transmembrane domain 817 1106 IPR036640 GO:0005524|GO:0016020
Sebi600g00044 1131 SMART AAA_5 583 756 IPR003593 GO:0016887
Sebi600g00044 1131 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 882 1088 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi600g00044 1131 Gene3D - 551 785 IPR027417 -
Sebi600g00044 1131 CDD ABC_6TM_ABCC_D1 267 529 IPR044746 GO:0140359
Sebi600g00044 1131 Pfam ABC transporter transmembrane region 241 506 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi600g00044 1131 Pfam ABC transporter transmembrane region 844 1051 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi600g00044 1131 Pfam ABC transporter 574 708 IPR003439 GO:0005524
Sebi600g00044 1131 ProSitePatterns ABC transporters family signature. 681 695 IPR017871 GO:0005524|GO:0016887
Sebi600g00044 1131 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 164 876 - -
Sebi600g00044 1131 SUPERFAMILY ABC transporter transmembrane region 229 534 IPR036640 GO:0005524|GO:0016020
Sebi600g00044 1131 SUPERFAMILY ABC transporter transmembrane region 864 1105 IPR036640 GO:0005524|GO:0016020
Sebi600g00044 1131 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 558 779 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi600g00044 Sebi-Chr600 564900 570386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi600g00044 550 771 Calmodulin-binding Proteins AT2G36910 29.707 9.13e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi600g00044 K05666 - gmx:100811468 1911.73