Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00176 ATGTCATCCTCTGGCACATGGAGTGTTCAAGACAATAAAGCTTTTGAAAGCGCTTTAGCGGTTTATGACAAGGATACCCCTGACCGTTGGAGCAACATTGCAAAGGCTGTTGGTGGAAAAACTCCAGAAGAAGTGAAGAGGCACTATGAGGTCCTTGTGGAGGACATTAACCGTATTGAGTCAGGGCAAGTGCCCTTTCCATCATATAGGAACCCCAAAGAAGGCGCTTAA 231 0.4632 MSSSGTWSVQDNKAFESALAVYDKDTPDRWSNIAKAVGGKTPEEVKRHYEVLVEDINRIESGQVPFPSYRNPKEGA 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00176 76 Gene3D - 1 66 - -
Sebi5g00176 76 FunFam Transcription factor SRM1 1 66 - -
Sebi5g00176 76 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Sebi5g00176 76 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 72 IPR044636 GO:0003700
Sebi5g00176 76 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Sebi5g00176 76 SMART sant 3 55 IPR001005 -
Sebi5g00176 76 CDD SANT 6 53 IPR001005 -
Sebi5g00176 76 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Sebi5g00176 76 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00176 Sebi-Chr5 4006798 4007028 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi5g00176 Myb_DNA-binding 6.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00176 - - aprc:113867554 132.88