Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi5g00159 | ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGGCAGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCTAGTATTGTAGGCCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAAAAGGATGCATATGTTGGTGATGAGGCACAGTCTAAACGTGAAGAGCATCCAGTTCTGTTAACGGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTAATGCCCCTGCTATGTATGTAGCCATTCAGGCTGTGCTTTCACTGTATGCCAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCCATCTATGAGGCAGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTCTTGTTCCAACCATCCATGGTGGGAATGGAAGCAGCAGGAATTCATGAGACAACATACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCATTAGCCCCCAGCAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGACCATCAATTGTGCATAGAAAGTGCTTCTAA | 918 | 0.4728 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKREEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi5g00159 | 305 | Gene3D | - | 202 | 268 | - | - | |
| Sebi5g00159 | 305 | SMART | actin_3 | 7 | 305 | IPR004000 | - | |
| Sebi5g00159 | 305 | Gene3D | Actin; Chain A, domain 4 | 134 | 201 | - | - | |
| Sebi5g00159 | 305 | Gene3D | - | 64 | 103 | - | - | |
| Sebi5g00159 | 305 | SUPERFAMILY | Actin-like ATPase domain | 113 | 305 | IPR043129 | - | |
| Sebi5g00159 | 305 | FunFam | Actin, alpha skeletal muscle | 259 | 305 | - | - | |
| Sebi5g00159 | 305 | FunFam | Actin, alpha skeletal muscle | 65 | 115 | - | - | |
| Sebi5g00159 | 305 | FunFam | Actin, alpha skeletal muscle | 183 | 258 | - | - | |
| Sebi5g00159 | 305 | Gene3D | - | 269 | 299 | - | - | |
| Sebi5g00159 | 305 | ProSitePatterns | Actins signature 2. | 286 | 294 | IPR004001 | - | |
| Sebi5g00159 | 305 | PANTHER | ACTIN | 135 | 298 | IPR004000 | - | |
| Sebi5g00159 | 305 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 139 | - | - | |
| Sebi5g00159 | 305 | Gene3D | - | 104 | 133 | - | - | |
| Sebi5g00159 | 305 | Pfam | Actin | 134 | 305 | IPR004000 | - | |
| Sebi5g00159 | 305 | Pfam | Actin | 58 | 133 | IPR004000 | - | |
| Sebi5g00159 | 305 | SUPERFAMILY | Actin-like ATPase domain | 6 | 119 | IPR043129 | - | |
| Sebi5g00159 | 305 | Gene3D | - | 3 | 63 | - | - | |
| Sebi5g00159 | 305 | FunFam | Actin, alpha skeletal muscle | 121 | 201 | - | - | |
| Sebi5g00159 | 305 | ProSitePatterns | Actins and actin-related proteins signature. | 70 | 82 | IPR020902 | - | |
| Sebi5g00159 | 305 | PRINTS | Actin signature | 106 | 125 | IPR004000 | - | |
| Sebi5g00159 | 305 | PRINTS | Actin signature | 81 | 94 | IPR004000 | - | |
| Sebi5g00159 | 305 | PRINTS | Actin signature | 19 | 30 | IPR004000 | - | |
| Sebi5g00159 | 305 | FunFam | Actin, alpha skeletal muscle | 3 | 64 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi5g00159 | Sebi-Chr5 | 3631922 | 3633804 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi5g00159 | 1 | 305 | Cytoskeleton Gene Families | AT3G12110 | 78.249 | 0.0 | 580 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi5g00159 | K10355 | - | han:110937948 | 568.926 |