Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00129 ATGGCTTGTCGTTTACGATCACGACCCGTCATTGCATCTCCTCAGTTGAAGGGCATATTGGTCACGGCTGAAGGATGCCCTTTCTCTTGTCCATTTCTCCTCCTAGCTGAGAAGATTAACTTTAGTGTGGGACCCACTCACTTTTTTATATCTGCTTGCCAAACAAGGTTGATACAATGTTCTCTCGCCTTTCTCTCTCAGCCGTTTCTCTTCAAACAAACAAAGGTTAAGGTAGAGAAGATAAAAGCATGCAATGGAATGGATTTTACAAACATCTCTGAAGCTGAGACGGAGATGATGGAAATTATTACCGACTCAGACTCGGACGCTGCGATATGGAAAGAAATTGAGGTTTCTGAGAGCTACCTTGTTTGCTCCATGTACGAAGAAGCGGCATCATTAGCTTCCTCTATTTTGAAACTCTTGCGTGATGATTATGATGCTAAAGACATTGCAACTCAAGATATGTTGGAATCAACTGCTATGGTGCTGGTTCAGGCACTCAAGGAACTTGGCAGGACACCAGAAATTCTTGATCAACTCAGACTGTATTTTATTTCAGTAAAAGCTATTCCAGCCCAAGTTCTTCTCACTGGGGCTTGTTTTCAAATAGCAGAAGGTTCTGCTTTTGGCGTTCAAGAATTGCTTGAGGAGTTTCTTAATGGATGGAGTCTTGTGGATGCAAAAGATGATATTGTCATTGCAGAAGCAAATACAGATCATGAAAGTAGATATGAAAGGCACTTTGTTCTTGGAATCGATAAATATTTGGAAACTGTCGAGCTCTATGCCATCACACTTCTTGCTACAGTTCTAAAGGATGTAGATCGTGCAATTTCCTGGGTTGAGAATGCTTCATTGCCTGAGGGAGATCGGCAGGGACTTCTGAGAAGGTTACACTCTATGCATTCTCTTAGAAGTACCATTTTATCTCAGATTCCCTCGACTCAATCACCTACAAATAACAATGAAGCTTATTCTTTAAAAGAACTCAATGCATGTGAAGGATCACCTGAAGCCTTGAAAGACAAACACACAGACAATAGAAAGTATAGGTCCAAAGGAGTTTCAAAACTGTCTGAACGAATAGAAACATGTTTCTGGTGCTTCCGTTCTATCAATTTGAAGTTTGGTACTGCCAAGTTTGCCATATCTAGTGGAAAGATTATGCTTGGTTGTTTAATCTTGCTCATCTATTATTTTTCCAGAAAGAAGCAAGCTACTTTAACAAGGATTGTAAGAAGACAAGTGACTGCCACAAAAAGGGCTTTGGTGGATTTGTGGCAGCTTGCATTTTCGTATCAACTGTGTGCCATACATGAAGAAGTAAATCAAGTTTTGGTTGTTTATTGTAAGCTAGGTGGACTAGTGAAACGCTCCAAAGGAAAATATGGCTATGGTTTTGGGGATTTAAGAATCATACCTTTTACCTTACCAGGACATGGAGGACTGCAGGGGAGCACGCCCGGCCAGCAAGCTAGCTTTGTGCTCTCTGAGACAGAGATGCTTCTCAAATTTAGGGAGTCCCTAGAAAACAACAATGCATTATCTGCATGGAATGCATCAACCCCTCCATGCACAGATGATCATGCCAATTGGAAAGGAATTTTGTGTTATAAAGGACATATATGGGGCTTGAAGCTTGAGAAGATGGGGCTCAAAGGGGTCATTGATGTCTCCTCCCTCAAGGATTTACCTTATCTCAGAACCATAAGTGTTATGAACAATGATTTTGACTCCGAATGGCCAGAGTTTAACATGTTAGTAGGTTTGAAAACGATTTACCTCTCAAATAATAAGTTTTCTGGGGAGATTCCTTCTCAAGCTTTTCAGGGTATGCAATGGTTGAAGAAAATTCATTTGTCACACAACCAGTTTTCAGGTCCTATCCCATCTTCGGTAGCTATGTTGCCTAGGCTTATGGAGTTGAGGTTGGAGGGAAACCAATTCACTGGCTCCATTCCCAAATTTCATCAAACATTAAAATCATTTAGTGTAGCTAATAATCAATTAGAGGGAGAAATACCAGCCAGCCTTAGTAAGTTGCCAGCTTCAGCTTTCTCTGGTAATGAAGATCTATGTGGAGGTCCAATAAGTGCATGCTCCTCCAAAAAGTCAAAAACTGTCACTATTGTTGTGGCTGTGGTTCTTGTCATTGTTGCACTGATTGTGATTGGTGCAGTAATATTATTGATCCTTCGTAGAAGAAGAAAACAAGCATCTGAAGTGTCAACTGAAAATCGACCCACCAGTCTCCAAAAGACAGGGGGAGTATCAGAGGAGGGGAGTCATAGGTCCTCAAGGTCACAAGGCTCCACTCGCAGCAGCAGCAGAAAAGGAGACAACATGAAGTTATCCTTTGTGAGGGATGACAGAGAGCACTTTGATTTGCAAGAACTGCTTAGAGCCTCTGCTGAGATTTTGGGTAGTGGTTGTTTCAGTTCTTCATACAAGGCTGCTTTGATAAATGGCCCATCTGTGGTGGTGAAGAGATTCAAGCAAATGAACAATGTAGGTAGGGAAGAGTTTCAGGAGCACATGAGAAGGTTAGGAAGGTTGAGTCATCCTAATCTGCTTCCTCTAGTGTCTTACTACTATAGAAAGGAAGAGAAGCTCTTGATTGGAGACTTTGTTCAAAATGGCAGCTTGGCTGCTCACCTTCACGGACACCAATCTATAGGCGAACCAAGCCTTGATTGGCCAAGCCGGTTGAAGATTGTGAAAGGTGTAGCAAAAGGTCTTGAATATCTATACAAGGAGATGCCAAGCCTAATTACACCCCATGGTCATCTTAAATCCTCCAATGTTCTTCTAAGTGAGAATTTGGAGCCAATTCTGAATGACTATGGTTTGGTACCAGTGATAAACCAGGATCTTGCTCCTGACATCATGGTGATCTACAAGTCCCCAGAATATTTGCAACATGGCCGTGTTACAAAGAAGACAGATGTGTGGAGTCTTGGGATACTGATTTTGGAGATTCTAACAGGTAAGTTCCCTGCAAACTTTCTACCACAAGGTAAAGCAAGTGAGTTGAGTTTGGCAACTTGGGTGGAGTCAATTGTCCCTGAAAATTGGAGTAGTGAGGTGTTTGATAAAGAAATGGGGGCAACAAAAAACAGTGAGGGGGAGATGGTGAAGCTTTTGAGGATTGCATTGAATTGTTGTGAAGGGGATGTGGATAAGAGATGGGATTTGAAAGAAGCTGTAGACAAAATTCAAGAGGTAAAAGAAAGAGATAATGATGAGGATTTTGCTAGTGAAGCTGACATGAAATCAAAAGATTCATCAGGTGAAGTTAGTTTCTCCATAAATGGTTGA 3321 0.4149 MACRLRSRPVIASPQLKGILVTAEGCPFSCPFLLLAEKINFSVGPTHFFISACQTRLIQCSLAFLSQPFLFKQTKVKVEKIKACNGMDFTNISEAETEMMEIITDSDSDAAIWKEIEVSESYLVCSMYEEAASLASSILKLLRDDYDAKDIATQDMLESTAMVLVQALKELGRTPEILDQLRLYFISVKAIPAQVLLTGACFQIAEGSAFGVQELLEEFLNGWSLVDAKDDIVIAEANTDHESRYERHFVLGIDKYLETVELYAITLLATVLKDVDRAISWVENASLPEGDRQGLLRRLHSMHSLRSTILSQIPSTQSPTNNNEAYSLKELNACEGSPEALKDKHTDNRKYRSKGVSKLSERIETCFWCFRSINLKFGTAKFAISSGKIMLGCLILLIYYFSRKKQATLTRIVRRQVTATKRALVDLWQLAFSYQLCAIHEEVNQVLVVYCKLGGLVKRSKGKYGYGFGDLRIIPFTLPGHGGLQGSTPGQQASFVLSETEMLLKFRESLENNNALSAWNASTPPCTDDHANWKGILCYKGHIWGLKLEKMGLKGVIDVSSLKDLPYLRTISVMNNDFDSEWPEFNMLVGLKTIYLSNNKFSGEIPSQAFQGMQWLKKIHLSHNQFSGPIPSSVAMLPRLMELRLEGNQFTGSIPKFHQTLKSFSVANNQLEGEIPASLSKLPASAFSGNEDLCGGPISACSSKKSKTVTIVVAVVLVIVALIVIGAVILLILRRRRKQASEVSTENRPTSLQKTGGVSEEGSHRSSRSQGSTRSSSRKGDNMKLSFVRDDREHFDLQELLRASAEILGSGCFSSSYKAALINGPSVVVKRFKQMNNVGREEFQEHMRRLGRLSHPNLLPLVSYYYRKEEKLLIGDFVQNGSLAAHLHGHQSIGEPSLDWPSRLKIVKGVAKGLEYLYKEMPSLITPHGHLKSSNVLLSENLEPILNDYGLVPVINQDLAPDIMVIYKSPEYLQHGRVTKKTDVWSLGILILEILTGKFPANFLPQGKASELSLATWVESIVPENWSSEVFDKEMGATKNSEGEMVKLLRIALNCCEGDVDKRWDLKEAVDKIQEVKERDNDEDFASEADMKSKDSSGEVSFSING 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00129 1106 MobiDBLite consensus disorder prediction 744 782 - -
Sebi5g00129 1106 FunFam Pollen receptor-like kinase 1 878 1087 - -
Sebi5g00129 1106 Pfam Leucine rich repeat 590 650 IPR001611 GO:0005515
Sebi5g00129 1106 MobiDBLite consensus disorder prediction 742 783 - -
Sebi5g00129 1106 FunFam pollen receptor-like kinase 1 771 877 - -
Sebi5g00129 1106 Gene3D Phosphorylase Kinase; domain 1 767 877 - -
Sebi5g00129 1106 Pfam Protein kinase domain 805 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00129 1106 SUPERFAMILY Protein kinase-like (PK-like) 806 1074 IPR011009 -
Sebi5g00129 1106 Gene3D Ribonuclease Inhibitor 495 584 IPR032675 -
Sebi5g00129 1106 Gene3D Ribonuclease Inhibitor 585 710 IPR032675 -
Sebi5g00129 1106 Gene3D Transferase(Phosphotransferase) domain 1 878 1100 - -
Sebi5g00129 1106 ProSiteProfiles Protein kinase domain profile. 802 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00129 1106 Pfam Leucine rich repeat N-terminal domain 498 538 IPR013210 -
Sebi5g00129 1106 MobiDBLite consensus disorder prediction 1079 1095 - -
Sebi5g00129 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 494 1081 IPR046959 -
Sebi5g00129 1106 MobiDBLite consensus disorder prediction 1079 1106 - -
Sebi5g00129 1106 SUPERFAMILY L domain-like 499 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00129 Sebi-Chr5 2998878 3011711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00129 476 1105 Receptor kinase-like Gene Family AT5G35390 52.496 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi5g00129 Pkinase 3.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00129 - - gmx:100804368 846.654