LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi5g00116	ATGGGACAATTTGTATGTAACAAGGAGGGAGAGAGAAGTGAGAAGCATCTTAATAGGAATGGTAGAAAGAGGGAGGCAAAGGCCATTACACGAACAAAATATAATGCAAGGCTCCGAATTCATTTAAATTATAAGAGTAGGAAGTGGAGGGTGGGTTGTTTTGAACCAATTCACAACCATGAATTGACTCCTGCGAGTATGGTACATTTGCTACCAGCTTATCGTGGGTTGAGTGTTGCTGATAAGGCACAAGTTGATGGTCTTCATTTATATGGTGTTAGGACTTGCCATATTATGGGTCTTATAATGGGTCAGAAGGGGGGTTATTCAGATCTTGGATTTTGTAAGAAAGATTTGTACAATCACATTGATAAGGTCAACAGGGCAAAAACTGAGGATGGTGATGCTTTTGCAGCCTTGTCTTACCTTCAGGCAAAGCTTTGTGCATGGCACCTCCATCAAAATGCTTGTGAAAATGTTAAGAATCCAAAATTTCTTGAAGATTTCAAGAACCTAATTTATGGAAGTTTTACCCGTGAAAATTTTGAGGATGAGTGGAACAAAGTTGTTGAGAAACATGGTGTGAGGGAAAATAGGTGGGTTAGAAAAGTTTATGAGCTGAAGAGGATGTGGGCCACTGCATATTTAAGGGATAATTTTTTTGGGGGGATTAGGACAACTTCAATCTGTGAGGGAATAAACTCTTTCATTAAAAGTGCTATGAAGCATAAGCAAGTGGAATCCATTCCTGCATCTCTTATTTGCAAGAGATGGACCAAGTTAGCTAAAGTTGACCACATTTCTGATGTTTATGCTGAAGAAGCTGAACAGATGGAACGACAAGAAGGTATTGACTTGAATAGTGTTGATGTATCAAGAGTTGTGCGTGATCCTACAGTTGTTAAAACAAAAGGTGCTCCACAAATGAATAAGAAAAGGACAAAAAAAAGGAGATGTTCTTATTGTAAACGGCCAGGACACACAGTTAGGACATGCACAAAATATGCCACTCGTGATCAGTTGGGTACAGTTATTGAAGAGGAATCATCTGTTGAGACTGATCAAGACTCAAGAGACGAAAGTGTGTCCGTGAATCCTCAATTTTCCCGGGATGTGAGGAATGTATCTGTTTCTGGTGATCATAATCGTGCTTCAGACAAGGGACAAGGTCAATCCAAGAAGAAAAGGAAATTTAATGAAAATGTGAAACATAATGAAGCACCAGTGAAACTGACACAAGAGTCAGTGAATGAAATGAGGTCCAGTGATGTAAATAAGGCTCATAAGAGCGGTATGAGTTTGAGTTGTGCTCAAAATTTTAAATCTGATTTCAATGTCAATCAGATGAGCACCCCCTCATTACCCTAA	1368	0.3918	MGQFVCNKEGERSEKHLNRNGRKREAKAITRTKYNARLRIHLNYKSRKWRVGCFEPIHNHELTPASMVHLLPAYRGLSVADKAQVDGLHLYGVRTCHIMGLIMGQKGGYSDLGFCKKDLYNHIDKVNRAKTEDGDAFAALSYLQAKLCAWHLHQNACENVKNPKFLEDFKNLIYGSFTRENFEDEWNKVVEKHGVRENRWVRKVYELKRMWATAYLRDNFFGGIRTTSICEGINSFIKSAMKHKQVESIPASLICKRWTKLAKVDHISDVYAEEAEQMERQEGIDLNSVDVSRVVRDPTVVKTKGAPQMNKKRTKKRRCSYCKRPGHTVRTCTKYATRDQLGTVIEEESSVETDQDSRDESVSVNPQFSRDVRNVSVSGDHNRASDKGQGQSKKKRKFNENVKHNEAPVKLTQESVNEMRSSDVNKAHKSGMSLSCAQNFKSDFNVNQMSTPSLP	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi5g00116	455	PANTHER	OS01G0519700 PROTEIN	3	143	-	-
	Sebi5g00116	455	MobiDBLite	consensus disorder prediction	386	404	-	-
	Sebi5g00116	455	MobiDBLite	consensus disorder prediction	360	385	-	-
	Sebi5g00116	455	MobiDBLite	consensus disorder prediction	346	431	-	-
	Sebi5g00116	455	Pfam	FAR1 DNA-binding domain	3	63	IPR004330	-
	Sebi5g00116	455	MobiDBLite	consensus disorder prediction	406	431	-	-
	Sebi5g00116	455	SUPERFAMILY	Retrovirus zinc finger-like domains	307	336	IPR036875	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi5g00116	Sebi-Chr5	2521860	2524353	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi5g00116		FAR1	7.2e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi5g00116	-		-	ahf:112803750	194.512