Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00109 ATGGACACGAAAAACCCATCTGAGAATTCTTCCAATTTTGAATCTTTCATGCATAATCCATCGTCACGTAGAAGTGCCATGTCCATTCAGTCTAAGAGTTCTGGCAGGAATTCAACCCGGGAAGTGACTTTTGACCATTCAGGATCCAAGCCTGTGAGGTATGGGTCAAAGGGTGCTGATTCTGAAGGTTTCAGCATGTCCCAGAAGGAAATCAGTGATGAGGATGCTAGGTTGGTTTATGTTGATGATCCTCAGAGGACAAACGAGAGAGTTGCTTACATTTATTTCCTTATAATTGCCATTCTTAATCAGCTCCCTCAGCTAGCTGTTTTTGGAAGGGGTGTTTCTATTTTGCCATTAGCCTTTGTTCTTCTTGTTACTGCTGTGAAGGATGCATATGAGGACTGGAGAAGGCACAGATCAGACAAAGTTGAGAACAACAGGTTAGCATTTGTTTTGGTTAATGGCGAGTTCCAAGAAAAGAGATGGAAAGATATTAAAGTTGGTGAGATCATTAAAATCAGTGCAAATGAAGCCATTCCTTGTGACTTTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTCTTAATCTAGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATCTAAGTTTCATGAAAAGGAGAGGTTCGATGGATTGATTAAGTGTGAGAAACCCAATAGAAATATATATGGGTTTCAGGGTAACATGGAAATTGATGGAAAGAGGTTGTCTCTTGGGTCCTCCAATATTGTCCTTAGAGGTTGTGAACTCAAGAATACTCATTGGGCACTTGGTGTTGCTGTGTATTGTGGTCGTGAGACCAAAGCTATGCTCAACAGCTCAGGAGCTCCATCTAAGAGGAGCCGTCTTGAGACTCGGATGAACTCTGAGATCATCATGCTTTCTTTCTTTCTTGTAGCTTTGTGTACAGTTACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGAGTGAGTTGAATCTCTTGCCTTACTATAGGAAACTGGATGTTTCAGAGGGGAAAGAGGAAAGCTATGAATATTATGGATGGGGAATGGAAATCCTTTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATCCCCATATCCTTGTACATATCTATGGAGCTTGTCCGTGTCGGTCAGGCCTACTTCATGATCAAAGACTCCAGAATGTATGATGAGACAACAAATTCAAAATTCCAGTGCAGGGCCTTGAATATTAATGAAGATTTAGGGCAAATTAAATATGTATTTTCTGACAAAACTGTGGATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCGAGAGCTTTTGCAATTAGCAAAAAGTGGATTTTCAAATATAGAGGGAAAACGAATTTATGATTTCTTTCTAGCACTGGCAGCATGCAATACTATTGTGCCTCTTATTATTGACACATCTGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGGCATATGCTGCCGCTGCATATGGTTTTATGCTTATAGAGCGAACCTCGGGTTACATTGTCATTGATATTCATGGAGAAAGACACAGGTTCAATGTCTTGGGTTTGCATGAATTCGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAATGACAACTCTGTGAAACTTTTTGTCAAAGGGGCAGATACATCCATGCTTAGTGTGATAGATAAATCATTGAACACAGACATAATAAAAGCAACTGAAGCCCATCTCCACTCTTATTCTTCCCTGGGTTTGAGGACACTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAATTTGAGCAATGGCATTTTACCTTTGAGGCAGCAAGTACTGCTTTGATTGGTAGGGCTGCTATGCTTCGCAAGGTTGCTATCAATATAGAGAACAATCTCTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATCGAGTCTCTAAGGAGTGCAGGTATTAAAGTATGGGTGTTGACTGGAGACAAACAGGAAACTGCCATATCAATTGGATACTCCTCAAAGCTCCTCACGAGCAACATGACTCAAATTATACTTAAGAGCAACAATAGAGAGTCATGTAGAAGACGGTTACAAGACGCCCTTGTCATGTCTGAAAAAAACATGGCTCAATCTGCAGTTACCAACTATCCTGAAGGAAGTTCTGATGTTACAACTACAATAGCCTTGATTATTGACGGTACCAGCCTTGTATACATTCTTGACAGTGAACTTGAAGATGAGCTCTTTCGACTTGCAAGTAGATGTTCTGTTGTTCTGTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGAATTGTTGCCCTAGTGAAGAAAAGGACAGCTGATATGACTCTAGCCATTGGTGATGGGGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGGCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGAAATGCTGTCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGTAGCATGTTGTATTCAATAGTCTACACTGCATTGCCAACTATTGTTGTCGGTATTCTTGACAAGGATCTTAGTAAAAGGACACTCCTAAAGTATCCTCAGCTTTACGGGGCTGGGCAGAGACATGAGGCCTACAACAAAAAGTTATTTTGGTTGACAATGGCTGATACTTTGTGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTTGCATATTGGGGAAGCTCTGTAGATGTAGCAAGCATAGGAGATCTTTGGACTCTTTCAGTAGTTATTATGGTTAATTTGCACTTGGCAATGGATGTCATCAGGTGGAATTGGATTATTCATGCAGCCACTTGGGGGTCTGTCATTGCAACTTTTATTTGTGTTATGGTTATTGATGCTATACCGGCATTTCCTGGTTACTGGGCCATCTTTCACACTGCAGGGACTGGACTGTTCTGGCTATGTTTGCTGGGAATTGTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAATTTGTTTATCAATATTATTTTCCCAATGATATTCAGATTTCAAGAGAAGCTGAGAAGTTTGGGAATGTAAGGGTCAATGAAGGTGGACAGATAGAAATGCATTCCATCTCAGATGGTCCACCAAGATGA 3270 0.4122 MDTKNPSENSSNFESFMHNPSSRRSAMSIQSKSSGRNSTREVTFDHSGSKPVRYGSKGADSEGFSMSQKEISDEDARLVYVDDPQRTNERVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLAFVLVNGEFQEKRWKDIKVGEIIKISANEAIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKFHEKERFDGLIKCEKPNRNIYGFQGNMEIDGKRLSLGSSNIVLRGCELKNTHWALGVAVYCGRETKAMLNSSGAPSKRSRLETRMNSEIIMLSFFLVALCTVTSVCAAVWLKRHKSELNLLPYYRKLDVSEGKEESYEYYGWGMEILFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIKDSRMYDETTNSKFQCRALNINEDLGQIKYVFSDKTVDGKVLKPKMKVKVNRELLQLAKSGFSNIEGKRIYDFFLALAACNTIVPLIIDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGYIVIDIHGERHRFNVLGLHEFDSDRKRMSVILGYNDNSVKLFVKGADTSMLSVIDKSLNTDIIKATEAHLHSYSSLGLRTLVIGMRDLNASEFEQWHFTFEAASTALIGRAAMLRKVAINIENNLCILGATAIEDKLQQGVPESIESLRSAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIILKSNNRESCRRRLQDALVMSEKNMAQSAVTNYPEGSSDVTTTIALIIDGTSLVYILDSELEDELFRLASRCSVVLCCRVAPLQKAGIVALVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRNAVLVLVLFWYVLFTAFTLTTAINEWSSMLYSIVYTALPTIVVGILDKDLSKRTLLKYPQLYGAGQRHEAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSSVDVASIGDLWTLSVVIMVNLHLAMDVIRWNWIIHAATWGSVIATFICVMVIDAIPAFPGYWAIFHTAGTGLFWLCLLGIVIAALLPRFVVKFVYQYYFPNDIQISREAEKFGNVRVNEGGQIEMHSISDGPPR 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00109 1089 Gene3D - 653 853 IPR023214 -
Sebi5g00109 1089 FunFam Phospholipid-transporting ATPase 122 291 - -
Sebi5g00109 1089 Pfam Phospholipid-translocating P-type ATPase C-terminal 853 1056 IPR032630 -
Sebi5g00109 1089 NCBIfam phospholipid-translocating P-type ATPase 89 441 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Sebi5g00109 1089 NCBIfam phospholipid-translocating P-type ATPase 449 854 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Sebi5g00109 1089 SUPERFAMILY Calcium ATPase, transduction domain A 147 288 IPR008250 -
Sebi5g00109 1089 Gene3D - 121 291 - -
Sebi5g00109 1089 FunFam Phospholipid-transporting ATPase 653 855 - -
Sebi5g00109 1089 NCBIfam HAD-IC family P-type ATPase 786 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi5g00109 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 92 1055 IPR023298 -
Sebi5g00109 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 669 IPR023299 GO:0000166
Sebi5g00109 1089 Gene3D - 500 632 IPR023299 GO:0000166
Sebi5g00109 1089 MobiDBLite consensus disorder prediction 1 68 - -
Sebi5g00109 1089 Pfam E1-E2 ATPase 151 392 - -
Sebi5g00109 1089 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 89 854 - -
Sebi5g00109 1089 MobiDBLite consensus disorder prediction 1 45 - -
Sebi5g00109 1089 SUPERFAMILY HAD-like 648 864 IPR036412 -
Sebi5g00109 1089 FunFam Phospholipid-transporting ATPase 501 634 - -
Sebi5g00109 1089 Pfam Cation transport ATPase (P-type) 505 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00109 Sebi-Chr5 2174719 2180298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00109 17 1089 Primary Pumps ATPases AT5G04930 63.815 0.0 1524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00109 K14802 - gmx:100784988 1791.55