Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00102 ATGGAGTCTCTTTTGAAGGATTTCGAACTAGAGTCGAAGAATCCATCTGAAGAGGCGCTGAGACGTTGGAGATCGAGCGCAGCGTTGGTGAAGAATCGCCGGAGAAGGTTCCGCTATGCCGCGGATCTCGAAAAACGTGCCGAACGGGAAGAAATCAAGGAAAAGATGCAGGAAAAGATTCGGATTGTTCTATATGTTCAGAAAGCAGCTTTGCAATATATTGAATCTGAGTCTGGTAAACTTGAATATGAGAATCATGCCACATCTGATCTTCCAGATGGTTTTGGCATTGATCCAGATTCAATTGCATCTCTTGTTCGGTGCTGTGATAACAACAGGTTGAAAGAAATTGATGGAGTTGAAGGGGTTGCGAGGAAACTCCATATCTCAGTGGTAGATGGTATTAGTGAAGACAGCATAAATACCCGGCAAAACTATTACGGGTTTAACCGCTATGCAGAAAAGCATTCTAAAACTTTTCTTATGTTCATGTGGGAATCACTGCAGGACTCAACACTCATTATTCTCATGGTTTCTTCCATAGTTTTAATAGGTGTAAGAGTTGCCACCGAAGGGTGGCTGGTGAGTTTGTATGATGAGGTGGGAATTATACTTGGTGTATTCTTGGTAATCATCTTTACCACTGTCAATGACTACCAGCAATCATTGAAGTTCAGGGAATGGGACAAAGAGAACAAAAACCTTTTTGTTCAGGTCACCAGAGATGGGAAAAGACAGAAGATATCAATTTATGACCTGGTGGTAGGAGACATTGTTCATTTGTCAATTGGGGGTCAAATTCCTGCTGACGGTATTTACATATCAGGATACAATTTACAGATCGATGAATCAAGTTTAACAGGTCAGATTGAAACAGTTCATGTAAATGAAGAAAAGCCTTTTCTCCTTGCAGGAACCAAAGTGCAAGGTGGGTCAGGGAAGATGATAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTGGAAGTTCTGAATGAGGGAGGAGAGGAGGAAACCCCGTTGCAGGTGAAATTGAATGGGGTTGCCACAATCGTTGGTAAGGTTGGCTTGAGTTTTGCTCTGATGACATTCGTGGTGTTGATGATAAGGTTTCTGGTGGAAAAAGCACTTAATGGTGAGTTTACTAATTGGTCATCAAAAGATGTGATCAAGCTGTTGAACTACTTTACTTTAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAATTTAATGAGTGATAAGGTACTAGTGAGGCATCTTTCTGCATGTGAGGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACATTGACCACTAACCACATGGTGGTTGATAAAATATGGATATCTGGAGAAGTTGTGAAGATGAAAGGTAAGAAGAGTGGAGACAAACTGAAAACAAAGATATCTGAAGGAGCTCTAAACATACTTCTGCAGGCTATATTTCAAAATAATGCTTCTGAAATGGTTCAGGATAAACATGGAAAGATCACAATACTGGGAACACCAACAGATTCAGCATTATTGAAACTTGGCTTGCTTTTGGAGGGTGATTTTGATGTCCAATGCAGATTGTATAAGAAACTAAAGGTTGAGCTTTTTAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGTCTTCCTGATGGAGGAGTAAGAGCTTTCTGCAAGGGTGCTTCAGAAATAATATTAAAAATGTGTGACAAAATCATTGATTGCAATGGAATACCTGTTGATTTCTGTGAAGACTATGCAAACAATGTCTCTGATGTTATAAATGCTTTTGGCTCTAAGACTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGTAATCCCTGGTGAAGCTGACATCCCTGATAATGGCTATACACTGATAGCCGTTGTAGGAATCAGAGATCCTGTGCGCCCTGGGGTCAAAGATGTTGTTCAAAATTGTTTAGCAGCTGGGGTGACCGTTGCTATGGTCACTGGTGATGATATAAATATAGCTAGGGCTATTGCTACAGAATGTGGTATACTAAAAAATGGTGGTGTAGCAATAGAAGGACCAGAATTTCGTAACTTGTCTGCAAGGCAAATGAAGGATATGGTACCAAGAATTCAGGTAATGGCACGGGTCCTACCACTTGACAAACACTCCTTTGTAGCTAATCTAAAGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAATCAGTGATGCTCCTGCACTGCATGAGGCAGACATCGGAGTTGCCATGGGATTAGCAGGAACCGAGGGAGATCCTCCAATGAGGTGGTTGCGGCATATAGCTCAACTGTACAGCTACAGAGTTTCCACCTCATTGGCTAGGGTTTATGGACAAATGATTGCCAAAGAAAATGCTGATATCATTATAATGGATGACAACATCACAACTATTGTCAATGTTATCAAATGGGGTCGTGCAGTATATACAAACATTCAAAAATTAGTGCAGTTTCAGTTAACAGTCATTATTGTTGCTCTGGTGATCAACTTTGTTTCGGCATCTATAGCAGGATATGTCCTCCTAACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACATTCTGTGCGCATTAGCCATGGTCACTGAGCCACTTAATGATGGACTTATAAAAAGGCCCCCAGTTGGAAAGAGAGAAAAATTTATCACCAGAGCCATGTGGAGGAATATCATTGGCCAAAGCATATTTCAAGTAATTGTCCTTACCCTTCTCAATTTTGAAGGGAAGGATATACTGCGCATAAGTGGTTCAGATGCAACTGATGTACTCAGAACTTTGATATTCAACTCCTTTGTATTTTTCCAGGTGTTCAATGAGATAAACTGCCGAGAGATAGAAAAGATAAACATTTTCAAAGGCATTCTTGACAGCTGGACATTTTTGGTAATAATTTTCTCAACAGTGGTAATTCAGGTAATCATAGTGCAGTTCCTCGGAACTTTTGCCTGCACGGTGCCTCTAAACTTGGAACTCTGGTTACTTAGTGTTTTAATTGGTGCCACTAGCATGCTTATAGCTTCTCTTCTGAAATGCATCCCAGTGAAAACAGATGTGGCTATTCACCATGAGGGTTATGAGGCACTGCCTCCACACCCCTAG 3186 0.4093 MESLLKDFELESKNPSEEALRRWRSSAALVKNRRRRFRYAADLEKRAEREEIKEKMQEKIRIVLYVQKAALQYIESESGKLEYENHATSDLPDGFGIDPDSIASLVRCCDNNRLKEIDGVEGVARKLHISVVDGISEDSINTRQNYYGFNRYAEKHSKTFLMFMWESLQDSTLIILMVSSIVLIGVRVATEGWLVSLYDEVGIILGVFLVIIFTTVNDYQQSLKFREWDKENKNLFVQVTRDGKRQKISIYDLVVGDIVHLSIGGQIPADGIYISGYNLQIDESSLTGQIETVHVNEEKPFLLAGTKVQGGSGKMIVTTVGMRTEWGKLVEVLNEGGEEETPLQVKLNGVATIVGKVGLSFALMTFVVLMIRFLVEKALNGEFTNWSSKDVIKLLNYFTLVVTMIVIAVPEGLPLAVTLNLAFATKNLMSDKVLVRHLSACEAMGSASYICLDKTGTLTTNHMVVDKIWISGEVVKMKGKKSGDKLKTKISEGALNILLQAIFQNNASEMVQDKHGKITILGTPTDSALLKLGLLLEGDFDVQCRLYKKLKVELFNPVQKKMTVLVSLPDGGVRAFCKGASEIILKMCDKIIDCNGIPVDFCEDYANNVSDVINAFGSKTLRTLCLAVKDINVIPGEADIPDNGYTLIAVVGIRDPVRPGVKDVVQNCLAAGVTVAMVTGDDINIARAIATECGILKNGGVAIEGPEFRNLSARQMKDMVPRIQVMARVLPLDKHSFVANLKNMFGEVVAVTGDGISDAPALHEADIGVAMGLAGTEGDPPMRWLRHIAQLYSYRVSTSLARVYGQMIAKENADIIIMDDNITTIVNVIKWGRAVYTNIQKLVQFQLTVIIVALVINFVSASIAGYVLLTAVQLLWVNLIMDILCALAMVTEPLNDGLIKRPPVGKREKFITRAMWRNIIGQSIFQVIVLTLLNFEGKDILRISGSDATDVLRTLIFNSFVFFQVFNEINCREIEKINIFKGILDSWTFLVIIFSTVVIQVIIVQFLGTFACTVPLNLELWLLSVLIGATSMLIASLLKCIPVKTDVAIHHEGYEALPPHP 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00102 1061 SFLD p-type atpase 433 834 IPR044492 -
Sebi5g00102 1061 Gene3D - 316 463 - -
Sebi5g00102 1061 Gene3D - 236 315 - -
Sebi5g00102 1061 Gene3D - 464 656 IPR023299 GO:0000166
Sebi5g00102 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1043 IPR023298 -
Sebi5g00102 1061 Pfam Cation transporting ATPase, C-terminus 868 1040 IPR006068 -
Sebi5g00102 1061 Pfam Cation transporter/ATPase, N-terminus 119 182 IPR004014 -
Sebi5g00102 1061 SUPERFAMILY HAD-like 439 777 IPR036412 -
Sebi5g00102 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Sebi5g00102 1061 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Sebi5g00102 1061 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Sebi5g00102 1061 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Sebi5g00102 1061 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Sebi5g00102 1061 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Sebi5g00102 1061 FunFam Calcium-transporting ATPase 15 75 - -
Sebi5g00102 1061 Pfam E1-E2 ATPase 237 429 - -
Sebi5g00102 1061 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 777 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi5g00102 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Sebi5g00102 1061 PANTHER CATION TRANSPORTING ATPASE 78 1043 - -
Sebi5g00102 1061 NCBIfam HAD-IC family P-type ATPase 203 473 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi5g00102 1061 FunFam Calcium-transporting ATPase 799 1045 - -
Sebi5g00102 1061 Pfam haloacid dehalogenase-like hydrolase 450 766 - -
Sebi5g00102 1061 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Sebi5g00102 1061 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi5g00102 1061 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi5g00102 1061 FunFam Calcium-transporting ATPase 461 656 - -
Sebi5g00102 1061 Gene3D - 15 75 - -
Sebi5g00102 1061 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Sebi5g00102 1061 Gene3D - 765 1044 - -
Sebi5g00102 1061 SFLD Haloacid Dehalogenase 433 834 - -
Sebi5g00102 1061 FunFam Calcium-transporting ATPase 213 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00102 Sebi-Chr5 2035627 2043430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00102 56 1061 Primary Pumps ATPases AT3G57330 60.477 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00102 K01537 - gmx:100783489 1348.18