Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00060 ATGGCTCCAAATATTGCTACAAGTGAAACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATATTTTCTAAAAACTCAAAGATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGGTTCCTCTGAAAATGCTGATGTTTCTGGCTTACCTGAAAGGCCATTAGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAATATGTAAATTTGGTGCTGCATGCAAATTCCATCACCCCAAGGATATTCAGATTCAGTTGTCTGATGAAACGAGTCGTATTGTTGAGCTGACACAAACAAATTCTATGTTGGAGGGGGCAACAGGAGATACACAACCAATTAAGCCTCTTATATCTCCATTGTTGCATAATAGCAAAGGTCTTCCTGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGCTGCTAATCTGAACATTGGAGTTATTAATCCAGCTACATCTGTTTATCAAGCTTTCGACCCCAGGCTGTCAAATCCAACGATGGGAGTAGCAGAGACTATCTATCCTCAACGGCCAGGACAAATTGAGTGCGATTACTATATGAAAACTGGTGACTGTAAATTTGGGGAAAGATGCAAGTTCCATCACCCAATTGATCGCTCAGCACCATCGCTGTCAAAGCAGGCTCCCCAACAAACTGTTAAACTCACTCCTGCAGGACTTCCAAGAAGAGAGGGTGCTGTGATCTGTCCATATTATTTGAAAACTGGCACGTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAACATCTGCAACTAATGGAGAGGAAGTTTAA 903 0.433 MAPNIATSETLPERPGEPDCPYFLKTQRCKFGSRCKFNHPKGSSENADVSGLPERPLEPPCAFYMKTGICKFGAACKFHHPKDIQIQLSDETSRIVELTQTNSMLEGATGDTQPIKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAANLNIGVINPATSVYQAFDPRLSNPTMGVAETIYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPSLSKQAPQQTVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSATNGEEV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00060 300 SUPERFAMILY CCCH zinc finger 19 42 IPR036855 GO:0046872
Sebi5g00060 300 FunFam Zinc finger CCCH domain-containing protein 37 1 47 - -
Sebi5g00060 300 Gene3D - 7 85 - -
Sebi5g00060 300 Gene3D - 123 166 - -
Sebi5g00060 300 SUPERFAMILY CCCH zinc finger 136 160 IPR036855 GO:0046872
Sebi5g00060 300 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Sebi5g00060 300 SUPERFAMILY CCCH zinc finger 60 83 IPR036855 GO:0046872
Sebi5g00060 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 225 IPR000571 GO:0046872
Sebi5g00060 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 279 IPR000571 GO:0046872
Sebi5g00060 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 82 IPR000571 GO:0046872
Sebi5g00060 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 16 41 IPR000571 GO:0046872
Sebi5g00060 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 158 IPR000571 GO:0046872
Sebi5g00060 300 Gene3D - 197 294 - -
Sebi5g00060 300 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Sebi5g00060 300 FunFam zinc finger CCCH domain-containing protein 37 197 293 - -
Sebi5g00060 300 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Sebi5g00060 300 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Sebi5g00060 300 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Sebi5g00060 300 SMART c3hfinal6 55 82 IPR000571 GO:0046872
Sebi5g00060 300 SMART c3hfinal6 14 41 IPR000571 GO:0046872
Sebi5g00060 300 SUPERFAMILY CCCH zinc finger 201 227 IPR036855 GO:0046872
Sebi5g00060 300 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Sebi5g00060 300 PANTHER PROTEIN PHOSPHATASE RELATED 9 172 - -
Sebi5g00060 300 ProSiteProfiles Zinc finger C3H1-type profile. 14 42 IPR000571 GO:0046872
Sebi5g00060 300 SUPERFAMILY CCCH zinc finger 256 279 IPR036855 GO:0046872
Sebi5g00060 300 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00060 Sebi-Chr5 1149555 1153611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00060 9 58 C2H2 Transcription Factor Family AT5G16540 41.818 1.09e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi5g00060 zf-CCCH 8.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00060 - - gmx:100793976 531.561