Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00059 ATGGCTTCAAAGCCTGTTGAAAGGCCTAATTTACCTGATATGAATAACAATGTGTCAGAAGAAGCTCACAAGACAGATCATAGTTGTGCAAATTCATCAAATGATCATTCAACAAGTCATGGTAGAAAGGTGAATAATAATCAAGCAACAAAAGATGCCTTCACAAATGAGCAAACAACCAATAGAGAAGGACACATAGATCAATGTTCTAAAAATAATGCAAAGATGGCAAGTAAACCAGCATCTAAGCCTCAGAAATTAGAATCACATATAAGGAACATTTCTGAATTTACCACTAATCAACGCCCAAGTCCAGGTGCAAGAATGCCTTCAAATTGTGACCCTTCAACCACCTCATCAGGAGTAACAACAGGAACTGCAAGAGGGTTTGCTATGTCTTCAAAGACCACAAATCATGGTCAAGGGAGTGGAACTAGCTCTCGTAGTGACAGTTTAGAGAGTAGTAGCAGTCAACACATTAAGCCACACACTGGAGGTGATGTAAGGTGGGATGCAATTAACAAAGTTTCAAGAGGCTCCAATCTTAACCTTAGCCATTTCAGGCTTTTGAAACGTGTTGGATATGGAGATATTGGAAGTGTATATCTTGTGGAACTTAAAGGGACTGGAACCTTCTTTGCCATGAAAGTAATGGATAAGGCTTCTCTTGCAAGTAGAAACAAGCTTCTGAGAGCACAGACAGAAAGGGAGATTCTTGGACTTCTTGACCACCCTTTCTTGCCTACATTATATTCTTATTTTGAGACTGAAAAGTATAACTGTTTGATCATGGAATTCTGTAGTAGTGGTAGTCTGCATTCTCTTCGATTGAAGCAACCTAACAAGCATTTCACAGAAGAAGCTGCACGGTTTTATTGTTCAGAGATTTTGTTAGCTCTTGAGTACCTACACATGCTAGGCATTGTGTACAGAGACCTAAAACCAGAGAATGTTCTAGTCAGAGATTCAGGTCACATAATGCTTTCAGATTTTGATCTATCACTCCGCTGTTCAGTGTGTCCAACACTTGTAAAATCATCATCTGCACATGTAAGCAGCAATAACACTTCAGGTAGCATTTTAGATGATGAACATGCAGTACAAGGTTGTATGCAACCATCAAGCTTCTTCCCAAGGATTTTACCTTCAAAAAAGAACCGCAAATCAAAGTCAGATTTTGGCCTCATGGAAGGAGGTCGTCTTCCTGAACTAATGGCAGAGCCTACAAATGTGCGCTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATCCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACATTTGGGATCTTTTTATATGAGCTTTTGCATGGAACAACACCTTTTAAGGGTGCAGGAAACCGTGCCACACTCTTTAATGTTGTAGGACAACCCTTGAAGTTCCCAGATGCTCCTCATGTTAGTCCTGTTGCAAGAGACCTTATTAGAGGGTTGTTGGTGAAAGAACCTCAAAAAAGGTTTGCTTATAAGAGAGGTGCAACAGAGATTAAACAACACCCCTTTTTTGAAGGAGTGAATTGGGCTCTAATTAGAAGTGCTACACCTCCTATTATACCTGAACCTGTAGATTTTTCTCAGTATGCTAGCAAAGAGACAGTGAACACAACAGACAAGAAGATGGCAGACATTACTAGTGATAAAAACATCAATACACAAACTGATTCTTCTTATGAAGAGTTTGAGTATTTTTAG 1734 0.3991 MASKPVERPNLPDMNNNVSEEAHKTDHSCANSSNDHSTSHGRKVNNNQATKDAFTNEQTTNREGHIDQCSKNNAKMASKPASKPQKLESHIRNISEFTTNQRPSPGARMPSNCDPSTTSSGVTTGTARGFAMSSKTTNHGQGSGTSSRSDSLESSSSQHIKPHTGGDVRWDAINKVSRGSNLNLSHFRLLKRVGYGDIGSVYLVELKGTGTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKYNCLIMEFCSSGSLHSLRLKQPNKHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDSGHIMLSDFDLSLRCSVCPTLVKSSSAHVSSNNTSGSILDDEHAVQGCMQPSSFFPRILPSKKNRKSKSDFGLMEGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGNRATLFNVVGQPLKFPDAPHVSPVARDLIRGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPVDFSQYASKETVNTTDKKMADITSDKNINTQTDSSYEEFEYF 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00059 577 FunFam Serine/threonine-protein kinase D6PK-like 185 270 - -
Sebi5g00059 577 MobiDBLite consensus disorder prediction 31 67 - -
Sebi5g00059 577 Gene3D Transferase(Phosphotransferase) domain 1 271 338 - -
Sebi5g00059 577 SUPERFAMILY Protein kinase-like (PK-like) 184 551 IPR011009 -
Sebi5g00059 577 MobiDBLite consensus disorder prediction 97 162 - -
Sebi5g00059 577 Gene3D Transferase(Phosphotransferase) domain 1 391 534 - -
Sebi5g00059 577 MobiDBLite consensus disorder prediction 97 167 - -
Sebi5g00059 577 Pfam Protein kinase domain 188 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00059 577 Pfam Protein kinase domain 392 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00059 577 SMART serkin_6 187 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00059 577 Gene3D Phosphorylase Kinase; domain 1 185 270 - -
Sebi5g00059 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Sebi5g00059 577 ProSiteProfiles Protein kinase domain profile. 187 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00059 577 ProSiteProfiles AGC-kinase C-terminal domain profile. 517 577 IPR000961 GO:0004674|GO:0005524|GO:0006468
Sebi5g00059 577 MobiDBLite consensus disorder prediction 1 67 - -
Sebi5g00059 577 PANTHER FLIPPASE KINASE 1-RELATED 28 545 - -
Sebi5g00059 577 FunFam Serine/threonine-protein kinase AGC1-7 409 534 - -
Sebi5g00059 577 FunFam serine/threonine-protein kinase D6PK-like 271 338 - -
Sebi5g00059 577 CDD STKc_phototropin_like 185 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00059 Sebi-Chr5 1132171 1135443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00059 66 577 AGC Kinase Gene Family AT1G79250 65.291 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi5g00059 Pkinase 4.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00059 - - gmx:100802478 838.95