Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00038 ATGCATAGGTTTGCTTTTCTGTTAGGCTTTATCAACATACAGATAATTTTAATAGGGAACACAGCAGCTGATAAGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTAGATTGCAGTTCTCGTATTGGCCAAGAGCAGGCAGTGGCTATGAAGATGACATTGGAGGACTTTTATCATTACAGCAATCAGAGTTTTTCTCTGTACATAAGGAACTCTGAAGGGGATCCTCTTCAGGCAGCTCTTGCAGCTAGAGATCTTATTGATAAGCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGAAGAGACATCTCTAGTGGCTGACATCTGCAGCCAGAAGAGCATACCACTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAAATTGTTAAATCTTGGAAATCATATAATGTTAGCATAATATATGAAGATGGAGACTCATCATCCCTGGAAGTTTTATCTCAACTCTCTGGAGCTCTCAAAGAAGTTGGCACAGAATTAATCAATATTCTAGCTGTCCCACCTCTAATTTCCTCTTCATTGTCCCAAAAACTTGAGAAGTTAAGAGAAGGGCACTGTAGAGTCTTTATTGTCCATTTGTCCCTTCCTTTGGCACTACACCTGTTTGAAACTGCAAACAAAATGAATATGATGGAGGAAGGTAATGTATGGATTACTACTAGTACCTTCACAAACCTTGTTCATTCCTTGAATGCCCCCACTATCTCCAATATCCAAGGGATTATTGGAGTCAAGAGCTACATCCGAAATCAATCGCACCAATATGAGAATTTTTACCATAGATTTCGCAAAAAGTTTAGCTCACAGCATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCAGCCTATGCTCATGATGCTGCACGGACTGTGGCTCAGGCAATGAGGGAAACCAACCAAACAGGGGGTCCAGTTTTGCTAGATAAGATTTTGATTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCAATGACCATAAAATAGCCCCAGCACATACTTTTCAGATCATTGATGTGATTGGGAAGAGCTACAGGGAAATTGGATTCTGGTCAGATGGACTTGGTTTCTCAAAAACTTACGGCAGAAATGCTTCTTACAGTTCTTCTGTGAAGGAATTGGGAAAAGTGGTTAATCCAATATGTGCTAAACGACTAAGAATTGGTGTCCCCTCTTATGCAACATTCAAACCATATGTCGATGTTATTCAAGATGACTCTCAAAGTGCTCCCTCCTTCAAGGGAATTGCTATAGATCTTTTCAAAGAAATAGTAAAACAATTACCATACCATTTGGAATATGATTTCTTTGCCTTCAATGGCACACATGATGAATTGGTGAAGCAAATTTATTGGAAGAAATATGATGCAGCTGTTGGTGATGTAACAATAGAGTCCGCGCGTTATGAATACGCTTCATTCACCCAGCCCTATACTGATCCAGGAATGGTGATGATTGTTCCTGTTCAATCAGAAACAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATTTTGGTCATCATTATCTACAATGGCTTTGTTGTATGGATGATCGAAAGAAACCACCGCCCGGAACTTAGAGGTGACAAGTTACGTAGCAATTTGTCGAGGGTGGCAATGGTGGTTTGGCTATTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTACAAGCATGTTGACTGTTGAACGGTTTGAACCCACTGTAGACAGCATTCAACAACTACAAAACAGTAATGCCATGGTAGGATGTTACGGGGGAACCTACATGAAAAGATATATCCAGGAGGCATTGGACTTCAATGCAGAAAACATCAAGCAATATGACTCACCACAAAACTACAATGACGCTCTAAGAAAGAAAGAAATAGCAGCTGCCTTCTTTGATGCTCCTGCTGCGAAATTCTTCCTTGCAAAGAACTGTAAAGAGTTTGTCCAAGCTGGGCCTACGTACAAAATTGGAGGATATGCATTTGTATTGCTTCAACAATTCTTTCACTTTTCTCTTGTATTTCCAAAGGGGTCTCCATTGCTTGATGATGTAAACAAAGCACTACTAAACATATCAGAAAGTGGAATACTACGTAATCTAGAAAACAGTGTGCTTGAATCAGAGGAATGCAAAGACATAGTAGACCCAGGTAAAGAAACTAGTAGTCTTAGCCCTGGCAGCTTCATGGTGCTCTTCATCTTAACTGGAGGCACATCAACAACTGCTCTCTTAATTTACATATTTCCTGTGAATTATTTATGCCATGGACACAGAACAGTGTGGTGCCTAATGATGGCTGTGATTAAACGTTGGAGATCTCAAAAGAGACTATTTTTAAGAAGAGCCCAAATTGTTGCAGAATATCCTTTAAACTCTCCGAACAATTCTAATTTGACAACTTTAGCTTAA 2529 0.3998 MHRFAFLLGFINIQIILIGNTAADKSSDVKGIIGAILDCSSRIGQEQAVAMKMTLEDFYHYSNQSFSLYIRNSEGDPLQAALAARDLIDKQKVQAIIGPQTWEETSLVADICSQKSIPLLSLADATPEWAMEKWHFLLQASPSQIMQMKAIAEIVKSWKSYNVSIIYEDGDSSSLEVLSQLSGALKEVGTELINILAVPPLISSSLSQKLEKLREGHCRVFIVHLSLPLALHLFETANKMNMMEEGNVWITTSTFTNLVHSLNAPTISNIQGIIGVKSYIRNQSHQYENFYHRFRKKFSSQHFEEFNYEPGIFAAYAHDAARTVAQAMRETNQTGGPVLLDKILISNFTGLSGKIQFNDHKIAPAHTFQIIDVIGKSYREIGFWSDGLGFSKTYGRNASYSSSVKELGKVVNPICAKRLRIGVPSYATFKPYVDVIQDDSQSAPSFKGIAIDLFKEIVKQLPYHLEYDFFAFNGTHDELVKQIYWKKYDAAVGDVTIESARYEYASFTQPYTDPGMVMIVPVQSETGNRAWLFMKPFTKLMWILILVIIIYNGFVVWMIERNHRPELRGDKLRSNLSRVAMVVWLFVALIITQTYTASLTSMLTVERFEPTVDSIQQLQNSNAMVGCYGGTYMKRYIQEALDFNAENIKQYDSPQNYNDALRKKEIAAAFFDAPAAKFFLAKNCKEFVQAGPTYKIGGYAFVLLQQFFHFSLVFPKGSPLLDDVNKALLNISESGILRNLENSVLESEECKDIVDPGKETSSLSPGSFMVLFILTGGTSTTALLIYIFPVNYLCHGHRTVWCLMMAVIKRWRSQKRLFLRRAQIVAEYPLNSPNNSNLTTLA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00038 842 PIRSF IGluLR_plant 569 801 IPR017103 -
Sebi5g00038 842 PIRSF IGluLR_plant 1 573 IPR017103 -
Sebi5g00038 842 Gene3D - 426 531 - -
Sebi5g00038 842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 795 IPR015683 -
Sebi5g00038 842 Gene3D - 143 385 - -
Sebi5g00038 842 Gene3D - 572 651 - -
Sebi5g00038 842 Gene3D - 532 571 - -
Sebi5g00038 842 FunFam Glutamate receptor 415 529 - -
Sebi5g00038 842 Pfam Receptor family ligand binding region 49 374 IPR001828 -
Sebi5g00038 842 Gene3D - 33 365 - -
Sebi5g00038 842 FunFam Glutamate receptor 147 308 - -
Sebi5g00038 842 SUPERFAMILY Periplasmic binding protein-like II 416 742 - -
Sebi5g00038 842 CDD PBP1_GABAb_receptor_plant 33 392 IPR044440 -
Sebi5g00038 842 SUPERFAMILY Periplasmic binding protein-like I 32 386 IPR028082 -
Sebi5g00038 842 CDD GluR_Plant 417 742 - -
Sebi5g00038 842 Pfam Ligand-gated ion channel 742 777 IPR001320 GO:0015276|GO:0016020
Sebi5g00038 842 SMART GluR_14 420 747 IPR001320 GO:0015276|GO:0016020
Sebi5g00038 842 Pfam Bacterial extracellular solute-binding proteins, family 3 444 741 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00038 Sebi-Chr5 756103 760691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00038 6 801 Ion Channels AT2G29120 29.051 3.96e-113 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00038 - - gmx:100776939 1206.43