Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00032 ATGGATGATCCTATCCACCTTGAGAGGTTTAATCATGATTGCTCCAAGGAGCTTCAAGTGAATATTGCTGAGTTAAACAAAATACACTCACAAAATGTAGACTTTTTCCTTGTGCTTGATTTAGAGGGTAGGGTTGAGATTCTTGAGTTTCCAGTTCTATTGATTAGTGCAAAAACATTACAAGTTGAAGACATTTTCCACAGGTTCGTGAGGCCCTCAAAGATGAGTGAACAAAGAATAAATGAATACATTGAGGGAAAGTACGGAAAATTTGGAGTTGATAGAGTTTGGCATGACACAGCCATACCATTCAAGGAAGTTATTCAACAATTTGAAACTTGGTTGACGAAACATCAGTTGTGGATGGGTGGAGAGCTTAATCGCGCAGCATTTGTAACTTGTGGAAATTGGGATTTGAAAACAAAGGTCCCTCAGCAATGTGAAGTGTCAAAGATAAAGCTTCCTCCATATTTTACGGAGTGGATTAATCTTAAAGATGTCTACCTGAACTTTTATAATAGGAGGGCCACAGGAATGGTTACAATGATGAAAGAACTGCAAATACCATTGTTAGGAAGTCATCATCTTGGCATTGATGACACAAAGAACATAGCAAGAGTACTGCAGCACATGCTTGTTGATGGTGCACTGATCCAGATTACTGCAAGGAGGAATCCTAGGTCTCCTGGAGAAGTTGATGTAGATTTAAAGGGTGTGATTGAGCCACTAAAAGTCAAGGTTGAAGAAAGTGGAGAATCATTAGAGGCAAATGAGGATGCAAATGGATTAGAAGATGATGCCAAAGAAAGAAAAAAGAAGGCTGGTCGATCGGGTTTGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACAATCGAAACCATGGTGAATTGAATGAGGGTACTTCTGTTGGTGATGATGATGGTGGTGATGCCGGGGTTCGCCGTAGCTCTAGGGTTCGGCGTGTCCCGGTTATGCTCGATGCCTCTCCCACTCCCTCAAAGAAGCGGCGGAGGCTGAGCAAGAATGGAGTGTTGAAGGATGTAAAGGATGCCAAGAATGTAGAACGGTTGACCGGGAGTTCTGGTGGCGCAGAGGCTTCGAGAGTTTGGAGTTCAAGGTTGAGATCGAGGGTTGGAAGTGTAGGTTCTAAGGTGAAGGAGGAGAAGGAACCTCGCAGTGGGAAGAGGAAGCTGTTTGAGGATGATGTTAGAAGTAGGGTTGATGAGGAGGTGGAGGTTAGGGAGGTGGATAATAAAGAGGAATTGGAAGGTGGGATGCCAACAATAGTTAAGTCAAAGAGACCAGGGAGGATCAAAGCTACGAAGCGTGAAGAGGGACATGAAGATAAAGAGAATGAGGTTCATGAGAATTTAGATGAGACTAAGAGTCAAGAAGTGGAGCTTACATTGAACAAAGATGAGGAGAGTGCTTCAGTTTTGGAAGAAACCCAGTTGTCTGGTGGGAGTGGGAATCAGGTAGAAGTATTGGATGAGAATGCCCCTATAACAACAGGGAATCAAGAGGGAGACCTATCTAACAATGTGCAAACAGAGGAGTGTAATGGCAGTATTGAACTTTCTACAGTGGAACTTGTAGATAAACAGGATGATCAATTAGAGTCTGCAAAGGAAGGCAAAAATGCAAGTGATGTTGCAGAAGCTGCTGAAATTTTGACAGAACACAGAGAAAATGAAGAATCTGTTGATAAGGAGCTTGACATTGATGAAAAAACCTTGCAAGATGCAAATGCTGTGGGGATGAATGAGTCCAAACAAGCTTCAAATGATAAGCCTCGCCATCAACGTATTAAAGAGGGTAGGCGGTGTGGTTTGTGTGGTGGAGGGACTGATGGTAAACCTCCTAAAAGATTAGTTCAGGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCTTCAGCTTCAGAGGAACCTAATTATGATATCTGGGATGGCTTTGGCAATGAACCTGGATGGTTGGGGCGCCTCTTGGGTCCTATTGATGATCGCTATGGTATTGCTCGAATATGGGTTCATCAGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTTAGGGCTGCACTTTGTAGAGGAAGAGCATTGAAATGCACACGTTGTGGGAGGCGAGGAGCTACCATTGGTTGTCGTGTTGATCGCTGTCCAAAAACATATCACTTGGCATGTGCAAGGGCAAATGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCATGCACAGATCATCGGCATCTCTTCCAACCTCATGGTAATAAATATTTAGACCAGATAAAGAAGTTGAAGGCTAGGAAAATGAAGTTGGAGGTGAGGAAGCTTTCAAATGATGCATGGAAAAAGGACATTGAAGCAGAAGAGAGATGGCTGGAAAATTGTGGTGAGGATGAAGAATTTTTGAAACGTGAAAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCTGTATACATCGGTGGTTCAGACTCTTCCAATGAAAAATCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCAGTGTATGAAGGAAGTTGTTATTTTACCTCTACTATATCCTGAGTTCTTTGATAGTTTAGGGCTTACACCTCCAAGAGGTGTTCTGTTGCATGGGTACCCTGGAACTGGGAAAACCCTAGTGGTCCGAGCACTGATAGGTGCATGTGCTTCTGGTGATAAACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATACGTAGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAGATGCCAGCCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCTGTCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACCTTACTTGCTCTTTTAGATGGTTTAAAATCCAGGGGTTCAGTTGTAGTCATAGGTGCAACAAATCGTCCTGATGCTGTTGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTATTTTCCATTGCCATCAATTAAGGACAGAGCTGCTATTCTATCACTTCACACAAAGAGGTGGCCGAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGCAAAACTCCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTATGTACTCAAGCGGCAATCAATGCTTTGAAGAGGAATTTTCCTTTGCAAGAAGTGCTGTCTGCAGCTCAAGAGAAAGATTCTGGTTGCAAGAACCCTTCTCTTCCGTCCTTTGCGGTGGAGGAGAGGGATTGGTTGGAGGCTTTATCATGTTCCCCACCACCATGCTCCCGGAGAGAAGCTGGAAATGCTGCTAATGATGTAATATGCTCCCCTCTTCCCGTCCACCTTATTCCATGTTTGTTGCGTCCATTATGCACTCTTCTCTTATCTCTTTTTCTTGATGAACGCCTATGGTTGCCACCTCCTATAACAAGAGCTGTAACAATGATTAAAAATGTGATGATTTCTGCTTTAGACAAAAAGAAAATTCCTATTGATCATTGGTGGTTGCATGTTGATAAGTTTCTTCAAGAAGCAAATATTGCTGCAGAGCTAGAGAGGAAGCTTACTTGTTCTGGCATTTTGTCTGCGAATGATGGTTTTGCTGGTTCTCTTGATGTTGTGGATGATACTGATGACAACAGGGTGAATTTTGCACCCTCTATAAGGAACCATGTTGGCATGCGCAGTGGTTTGTCATTTGCATTGCCTAACAAATCAGGATTTCGTATATTGATTGCGGGAAATCCCAGATCTGGCCATAGACATCTTGCATCTTGCCTTCTTTCCTGCTTTATTGGGAATATTGAAATTCAGAAGATTGATATGGCAACTATTTGTCAAGAAGGACACGGAGATGTAGTACAAGGGATCGCGCAAATATTAATGAAATGTGCTTGTGTGCAATCATCTGTAGTATTCATGCCGAGAATAGATTTGTGGGCTGTAGAGACACATTTCCAAATTTCTAAAACCACCGACTCCTGCTCAACAAATCATCTATCTCCCGAGATGGAGAAGTCTTGTTTCAAACCAAGCCAAGTTGCTGAGAAGGAAACCGTGTGCAATGCAGAGGAAAACAAGTCAGCAGAAGCCGAAAGCCAAGCCGGCAGAAGGGCTTCACAGGCCTGGATGTCATTCATTGAGCAGGTGGAGTCCATTGGTGCATCCACATCATTGATGATTCTGGCTACCTCAGAAGTTCCTTATACTGAACTTCCATGTAAAATAAGGGATTTCTTCAAGACTTACCCATCAAAATGTGACGAATCAGCTCCTTTGGAGCAGACAGTTCCTCATTTCTCTCTGCATATTGATGGGAAATTTGATCAGGAGGTGGTGATCAATCAATCTGCAGTAGAGCTATTGAGAAATTTAGTTGAGCAGCAGATTCAATTGATTCATCAGGGATCTCACATTCATATGAATGCCCAAAGGAGGTACAGAACCAATGGTTCAATTGAAGCTTGCAGAGATACGGTACTTCAGAGAAACAATAATGGATTAGCCAATGAGAAGAAAGGTAAAATTCAACTTCCTGAATCTTTTACGAAAGTTCCAGGACCACCCAACAGTAGGTTACTGAAGGGAAAGTCAACCCTGCAGTTGGCAATATCCACATTTGGCTATCAAATTCTTCGATACCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAGGGTCCTTGTGCTGATGTAAGTGGACCTTGGAAGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAGTAATTCACAAGACAAGGTTTTTAGTACCTCTAGTGGCATAAAAAGCAAAGAAAGATCTGGTTTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCTTATAGAGGTGCTTACACATCTGTTAGGGAAGTTTCCCTTGAGGTACGGAATGTTCTTGAGATCTTGGTTGGGCAAGTCAATACAAAAATTCAAGCTGGGAAGGACAGATATCAATATCTTCGTATTTTATCGCAAGTTGCTTATCTGGAAGATATGGTCAATAACTGGGCTTATGCATTGCTGAGTCTAGAACAGGATTCCCCAGAGCTTGTGACAAAGGTTAAGCTGGGAAGTGTAGGGTCATTGAACAGCCATCTAACATGTGAGGATCACCAAGCTGAAGGTGTGGATTGCCATTTGGCTGTTCCTATGAACAGTGGTGGTTTGGATACACAGCAGAGGAATTGTGAGGGAATTCCTGCTGAAACAACTGGATGTCTTGACTTGAATGACAGAAATGATGATTTAAATAACCTTCACCACGATGGTAGCAATGCAAGTTCTAAAGGATCTCTTCAAAACCATTCCTTTTCAGATAAGCATATTAACAACTCTTCTGCTGCAAACCCACCTGTAGATCCATCCATAGATCAGGAAAATGGGACATCATCATTAACTTCTGAAAAACTTGCAGTGGTGAGTGGAGAACTTGGGTCTGTGAAAGACTTGAATGAATCTTCACTCACTCCCTCTGCTCCCCTTTGTGAAAATGGAGAATGTGGATTTTCAAAAGACTTGAATAAATCTACACTCACTGACTCTGTTATCCTTTCTGAAAATGGACTTGATAGTGCCTGTGAACCAGAGGGTGTTAAGATTGGTGACTCCAGGACAGTCTCTAATCCGTCCCTCAGCTTGGCCTCAGTAGAGACTGGCGTTAAACTTAGTGATGATAACCCCGGCAAAGATGAGATTCACGATAATGCTTTAGACACTAATGTCCCTTCAAGCAAGGATAGTGCCTGTGAACCAGAAGGTGTTAAGGTTGGTGACTCCAGGACAGTCTCTAATCCGTCTCTCAGCTTGTCCTCAGCAGAGACTGGTGTTAAACATAGTGATAATAACCCTGGTAAAGATGAGAATGCTTTAGACACTAATGTCCCTTCAAGCAAGGACAGTGGTCCTACTGAATCTGAGGTTATTTGTTTGTATCAATGTTGCCCTCAATGTCTACACATTCTCTATAATTTGACCAAGAAATTACTTGTTCATGAATGTGGGTTGAATAATAACCATTGGACAGTGGAAGATGTCCATGATGCTGTGGTATCACTATCTGTGGATCTTATTTCAGCACTCAGAAAATTTTATCTGGCCGAAGATTTCACTGATTTATCTGATAAAACCTTGAGGCATGAAAAGCATGGAGCATCACTTGACTGTTCAAACCTGAAGACTTGTAATCCCAGAAACGCAGGAGTGCCAGCTGAATGTATTTCTCACTCAACAAGCCTTCATACAGCTGCAAGCAAAGATATGGCATTGAATGAACCACTGGAGCTTCATTTTAATTTTGTTTTCCGAGATGGTGTACTTATTCATATGAACCCAGATGAGGATGTGTCTCTTCACTGTAAATTTGAGACCTTTTGCCTCTGTTCTGTTATAGAGTTAATAGTAATGACAAAGCGCCCTTGTGATTGA 6525 0.425 MDDPIHLERFNHDCSKELQVNIAELNKIHSQNVDFFLVLDLEGRVEILEFPVLLISAKTLQVEDIFHRFVRPSKMSEQRINEYIEGKYGKFGVDRVWHDTAIPFKEVIQQFETWLTKHQLWMGGELNRAAFVTCGNWDLKTKVPQQCEVSKIKLPPYFTEWINLKDVYLNFYNRRATGMVTMMKELQIPLLGSHHLGIDDTKNIARVLQHMLVDGALIQITARRNPRSPGEVDVDLKGVIEPLKVKVEESGESLEANEDANGLEDDAKERKKKAGRSGLRLRKKHKRLDAICEEEYNRNHGELNEGTSVGDDDGGDAGVRRSSRVRRVPVMLDASPTPSKKRRRLSKNGVLKDVKDAKNVERLTGSSGGAEASRVWSSRLRSRVGSVGSKVKEEKEPRSGKRKLFEDDVRSRVDEEVEVREVDNKEELEGGMPTIVKSKRPGRIKATKREEGHEDKENEVHENLDETKSQEVELTLNKDEESASVLEETQLSGGSGNQVEVLDENAPITTGNQEGDLSNNVQTEECNGSIELSTVELVDKQDDQLESAKEGKNASDVAEAAEILTEHRENEESVDKELDIDEKTLQDANAVGMNESKQASNDKPRHQRIKEGRRCGLCGGGTDGKPPKRLVQDNGESENEAYSGSSASEEPNYDIWDGFGNEPGWLGRLLGPIDDRYGIARIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHRHLFQPHGNKYLDQIKKLKARKMKLEVRKLSNDAWKKDIEAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSSNEKSFQGWESVAGLKDVIQCMKEVVILPLLYPEFFDSLGLTPPRGVLLHGYPGTGKTLVVRALIGACASGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSIKDRAAILSLHTKRWPKPITGSLLEWIASKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAQEKDSGCKNPSLPSFAVEERDWLEALSCSPPPCSRREAGNAANDVICSPLPVHLIPCLLRPLCTLLLSLFLDERLWLPPPITRAVTMIKNVMISALDKKKIPIDHWWLHVDKFLQEANIAAELERKLTCSGILSANDGFAGSLDVVDDTDDNRVNFAPSIRNHVGMRSGLSFALPNKSGFRILIAGNPRSGHRHLASCLLSCFIGNIEIQKIDMATICQEGHGDVVQGIAQILMKCACVQSSVVFMPRIDLWAVETHFQISKTTDSCSTNHLSPEMEKSCFKPSQVAEKETVCNAEENKSAEAESQAGRRASQAWMSFIEQVESIGASTSLMILATSEVPYTELPCKIRDFFKTYPSKCDESAPLEQTVPHFSLHIDGKFDQEVVINQSAVELLRNLVEQQIQLIHQGSHIHMNAQRRYRTNGSIEACRDTVLQRNNNGLANEKKGKIQLPESFTKVPGPPNSRLLKGKSTLQLAISTFGYQILRYPHFAELCWVTSKLKEGPCADVSGPWKGWPFNSCIIRPSNSQDKVFSTSSGIKSKERSGLVRGLVAVGLSAYRGAYTSVREVSLEVRNVLEILVGQVNTKIQAGKDRYQYLRILSQVAYLEDMVNNWAYALLSLEQDSPELVTKVKLGSVGSLNSHLTCEDHQAEGVDCHLAVPMNSGGLDTQQRNCEGIPAETTGCLDLNDRNDDLNNLHHDGSNASSKGSLQNHSFSDKHINNSSAANPPVDPSIDQENGTSSLTSEKLAVVSGELGSVKDLNESSLTPSAPLCENGECGFSKDLNKSTLTDSVILSENGLDSACEPEGVKIGDSRTVSNPSLSLASVETGVKLSDDNPGKDEIHDNALDTNVPSSKDSACEPEGVKVGDSRTVSNPSLSLSSAETGVKHSDNNPGKDENALDTNVPSSKDSGPTESEVICLYQCCPQCLHILYNLTKKLLVHECGLNNNHWTVEDVHDAVVSLSVDLISALRKFYLAEDFTDLSDKTLRHEKHGASLDCSNLKTCNPRNAGVPAECISHSTSLHTAASKDMALNEPLELHFNFVFRDGVLIHMNPDEDVSLHCKFETFCLCSVIELIVMTKRPCD 2174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00032 2174 FunFam ATPase family, AAA domain-containing 2 849 1032 - -
Sebi5g00032 2174 ProSitePatterns AAA-protein family signature. 995 1013 IPR003960 GO:0005524|GO:0016887
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 444 471 - -
Sebi5g00032 2174 Gene3D - 24 238 IPR036397 GO:0003676
Sebi5g00032 2174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1083 IPR027417 -
Sebi5g00032 2174 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 1026 1118 - -
Sebi5g00032 2174 ProSiteProfiles Extended PHD (ePHD) domain profile. 644 764 IPR034732 -
Sebi5g00032 2174 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 610 766 - -
Sebi5g00032 2174 Pfam PHD-like zinc-binding domain 685 764 - -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 301 327 - -
Sebi5g00032 2174 PANTHER AAA DOMAIN-CONTAINING 272 2075 IPR045199 -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 1787 1831 - -
Sebi5g00032 2174 SMART AAA_5 886 1027 IPR003593 GO:0016887
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 386 402 - -
Sebi5g00032 2174 Pfam Exonuclease 43 208 IPR013520 -
Sebi5g00032 2174 Gene3D - 851 1126 IPR027417 -
Sebi5g00032 2174 SUPERFAMILY Ribonuclease H-like 31 212 IPR012337 -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 383 402 - -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 1959 1978 - -
Sebi5g00032 2174 Coils Coil 1377 1397 - -
Sebi5g00032 2174 SMART exoiiiendus 35 217 IPR013520 -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 591 649 - -
Sebi5g00032 2174 Pfam ATPase family associated with various cellular activities (AAA) 890 1025 IPR003959 GO:0005524|GO:0016887
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 250 279 - -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 599 613 - -
Sebi5g00032 2174 Pfam AAA+ lid domain 1051 1083 IPR041569 -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 425 471 - -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 1917 1999 - -
Sebi5g00032 2174 MobiDBLite consensus disorder prediction 1784 1831 - -
Sebi5g00032 2174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 766 IPR013083 -
Sebi5g00032 2174 CDD ERI-1_3'hExo_like 36 212 IPR047201 GO:0000175
Sebi5g00032 2174 Gene3D - 1026 1118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00032 Sebi-Chr5 653568 671984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00032 852 1087 Calmodulin-binding Proteins AT3G56690 42.017 8.82e-47 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00032 - - lja:Lj3g3v0428950.2 2658.63