LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi5g00031	ATGGAGGATTTCATGATGTTCTCCTTCAAGACCCAAGAGCACCGAGCAAAACACAACAAGAGGCTAACTGAAGACCAAGTGGCCATCCTAGAGAATTGCTTTGCCTCTAACAAGAAGCTTGAACCAAAGCAGAAATTCCAGCTGGCAAACCAACTTGGTGTCCCTCCAAGACAGATTGCTATTTGGTACCAAAACAAACGAGCTCGCTGGAAGACACAGACCCTTGAGCATGACTACAATGCTCTTCAATCAAGGCTAGAGAATGTGATGGCTGAAAAGAAGCAACTAGAGAGAGATGTGGAATGCCTCAAGGTAGAGCTGAAAAAGGCTCAAGAGATGATGCTTATAAGCATGAAAGGCAATGCTTCTTCTTGTGAATTTTCAACATCTTTTGAAGAGGGATCAGGAGGGATGCATGATGATGAGGAGCTTTATGCTTACTTCATGGCTGCAAACGGGTCCAGTAATTTGCACTGA	477	0.4423	MEDFMMFSFKTQEHRAKHNKRLTEDQVAILENCFASNKKLEPKQKFQLANQLGVPPRQIAIWYQNKRARWKTQTLEHDYNALQSRLENVMAEKKQLERDVECLKVELKKAQEMMLISMKGNASSCEFSTSFEEGSGGMHDDEELYAYFMAANGSSNLH	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi5g00031	158	Gene3D	-	12	79	-	-
	Sebi5g00031	158	Pfam	Homeodomain	20	71	IPR001356	GO:0003677
	Sebi5g00031	158	ProSitePatterns	'Homeobox' domain signature.	48	71	IPR017970	GO:0000981\|GO:0006355
	Sebi5g00031	158	CDD	homeodomain	17	73	IPR001356	GO:0003677
	Sebi5g00031	158	ProSiteProfiles	'Homeobox' domain profile.	13	73	IPR001356	GO:0003677
	Sebi5g00031	158	SUPERFAMILY	Homeodomain-like	15	83	IPR009057	-
	Sebi5g00031	158	SMART	HOX_1	16	77	IPR001356	GO:0003677
	Sebi5g00031	158	Coils	Coil	72	113	-	-
	Sebi5g00031	158	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	14	129	IPR045224	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi5g00031	Sebi-Chr5	645238	645714	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi5g00031	20	156	Homeobox Transcription Factor Family	AT5G53980	46.528	1.90e-33	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Sebi5g00031		Homeodomain	2.2e-16	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi5g00031	-		-	gmx:100781030	207.608