Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00021 ATGGCAGAGAAAGCAAAGATGGGTGAAAAAGAGTGGTACTTCTTTAGCCTACGTGACCGAAAGTACCCAACTGGATTACGTACTAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGCAAAGACAGAGAGATTTATAGCTCCAAAACTTGCTCCCTTGTAGGCATGAAGAAAACCTTAGTTTTCTATAGAGGCAGAGCTCCCAAAGGAGAAAAGAGCAACTGGGTCATGCATGAATATCGTCTTGATGGCAAATTTGCTTATCATTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTCATATCACGTGTGTTTCAAAAGAACAACACAAGTGGTGGTGGCTCCACCGTGTCAGCCACCACCACCGCTTCAAAAAAGACAATGAGAACCAGTACTTCATCTACTACCATGAGCCTCTGCCCTGAACCAGGCTCACCTTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTCCCTACACTCCAACCACCGCCACTTCCTCCGCCGCCGCATATAACGACCGTGAGAGCTGCTCCTTTGACAGCGCCACCGTTCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGTTGCCGCTGATAACTTCGCCAACGCCGGCTTTGACTTTGCTCCGCCGCAGCAGCAGCCACCTCAGCTCGCCGTGGATCCTTTCTCTCGGTTCCAGAGGAACGTTGTTGGTGTGTCTGCCTTCCCCAGCCTGAGATCGTTGCAAGAGAATCTTCAGTTGCCGTTCTTTTTCTCACCGGCGGCGGCGCAGCCTGTGCATGGTGACGTGGCAGGTTGGCCGGTGCCGGATGAGCATAGGGTGGCTGACGGTGGTTCCGGTATGGCATTGGGAGCTTCCGAGCTTGATTGCATGTGGGGCTTTTGA 900 0.5189 MAEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLDGKFAYHYLSRSSKDEWVISRVFQKNNTSGGGSTVSATTTASKKTMRTSTSSTTMSLCPEPGSPSSIYLPPLLESSPYTPTTATSSAAAYNDRESCSFDSATVQREHVSCFSTISAVAADNFANAGFDFAPPQQQPPQLAVDPFSRFQRNVVGVSAFPSLRSLQENLQLPFFFSPAAAQPVHGDVAGWPVPDEHRVADGGSGMALGASELDCMWGF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00021 299 Pfam No apical meristem (NAM) protein 3 83 IPR003441 GO:0003677|GO:0006355
Sebi5g00021 299 ProSiteProfiles NAC domain profile. 1 108 IPR003441 GO:0003677|GO:0006355
Sebi5g00021 299 SUPERFAMILY NAC domain 3 108 IPR036093 GO:0003677|GO:0006355
Sebi5g00021 299 FunFam NAC domain-containing protein 100-like 1 112 - -
Sebi5g00021 299 MobiDBLite consensus disorder prediction 111 144 - -
Sebi5g00021 299 Gene3D NAC domain 1 112 IPR036093 GO:0003677|GO:0006355
Sebi5g00021 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00021 Sebi-Chr5 456090 457556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00021 4 299 NAC Transcription Factor Family AT5G53950 48.758 3.04e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi5g00021 NAM 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00021 - - gmx:100788671 392.889