Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00012 ATGACGTCCCTTACCCAACTTATACTTAAATGTTGGTGTTTATCATGTCGTTCTCTTCCCATTGACGATCATTCAAGTAATGATCTCTTCCCTTTGATGATCATTTCAACGGCGACTTGTGTTAGCTGTGACACTATCCCCAAATTTAATTTCTATCTCCAATCCGGTCCTCCACTTGATGAAATGTCAATTGCTTGCATTCTCCGTGACTTGCTTCATGCGATTGATTACCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACCGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGAAAGACGTTTGTGGGCACACCATTCTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGATATAATGAGAAGGCAGATATCTGGTCTATGGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCTATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCGCAGCTAGATGAGCATTTTTCTCGTCCCATGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTTTCATTCGGAATGCCAGGAAGAGTCCAAAGCTTTTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAATGAAGGAAGATCACGCAGCAGCTAGAAATGGTCCAAGAGGGATAGGGGAGGCATCTGATACTATGAAGGTAGCAAGGGATTTCAGAGTTGAAGAAACTAATCAGCCTAGTGACCAGGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTGGTGGGTCACAGGGTACTGGAACCTTCCGTAGTGTTTCACGGCCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTCAACCAAAGAAAAATTCCAGAGGGTGGCTATCAAGGGGGATCTGCCAATAGGAGTGTACTTAATGAGTTGCTAGAAACTTCTTCCGGAAAAGATCTTGGAGTTCCCTACCATGATGAGCATCCAGACAATCACCTTGAAGATGATGCATTGCCTGGGAATGGTTCAGGTACTGTTGTTGTTCGGTCTCCAAAAGGATCACAGCCATCGTTGTTTCGTGACCAAAGTTCCCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTACTAGTGGAACTGTTGTTTTGCGTAGTCCACATGATGATTCTGATTCTCCACAGACACCAAGGTCCCGATTGGGACTTAATAGCAGATATTCAAATTCCTCACTGGAAGATAGTGCCATGAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGAGGACTAAGAAAAGTGAATGCTCGAGAGAGATTTGCCATGGGGAAACTCAACAATGATGTTCAGGAAAACAGGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATGCACAAAAGGGAATTTCAAGATCACATTATGCTAGTGATGATGAAGAGAGTGCCAAAATAATGTCATCTTCTGTGCCGTTATCTGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGAAGGGTCAATTGTGCAAGCTGTTATCAATTCACTTGTAAACATGGAGAGGACCAAGCCTAGATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGTTGTTAGCAAGTTCAAAAGAATCTTCATTGAAGGACCTGCAAGAACTAGCATCACAATTATTTAGCAAGACCAAGCCAGCTGAAGAAACCCGAAATACTGCTGAGCCTGACAACAGGAAGAAACAACAGAACAAGGAAGCTCATTCAAATAGCAGTTTAAGCCCACTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAATCCAGCTTGA 1962 0.4286 MTSLTQLILKCWCLSCRSLPIDDHSSNDLFPLMIISTATCVSCDTIPKFNFYLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPKLLERIRERPKYQMKEDHAAARNGPRGIGEASDTMKVARDFRVEETNQPSDQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSNHQLNQRKIPEGGYQGGSANRSVLNELLETSSGKDLGVPYHDEHPDNHLEDDALPGNGSGTVVVRSPKGSQPSLFRDQSSRSSSSYASFEDASTSGTVVLRSPHDDSDSPQTPRSRLGLNSRYSNSSLEDSAMNLAEAKAAIQGGLRKVNARERFAMGKLNNDVQENRRDQMSSSSDSSRPSREYIDAQKGISRSHYASDDEESAKIMSSSVPLSVLLIPSLKEAIADDPEGSIVQAVINSLVNMERTKPRSCDVLVKKLLQLLASSKESSLKDLQELASQLFSKTKPAEETRNTAEPDNRKKQQNKEAHSNSSLSPLARFLLSRWQGQTSRDLNPA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00012 653 ProSiteProfiles Protein kinase domain profile. 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00012 653 MobiDBLite consensus disorder prediction 349 439 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 483 498 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 237 257 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 352 367 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 474 512 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 599 632 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 379 439 - -
Sebi5g00012 653 SUPERFAMILY Protein kinase-like (PK-like) 52 244 IPR011009 -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 269 335 - -
Sebi5g00012 653 SMART serkin_6 1 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00012 653 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 42 601 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 273 303 - -
Sebi5g00012 653 MobiDBLite consensus disorder prediction 606 624 - -
Sebi5g00012 653 Gene3D Transferase(Phosphotransferase) domain 1 39 251 - -
Sebi5g00012 653 FunFam Serine/threonine-protein kinase PAK 6 50 238 - -
Sebi5g00012 653 Pfam Protein kinase domain 50 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00012 Sebi-Chr5 300981 308133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00012 53 650 MAP Kinase Kinase Kinase Kinase AT3G15220 62.333 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Sebi5g00012 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00012 K08838 - gmx:100786501 1024.23