Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00008 ATGGTGCTGCAAAGACGTCACTCTATGACTTTTGTGCAACGGGGTTTCTTGGCTTGCTTTATTTGCTTTTCTGTGGGACTTGAAACCCCAGCCCCATCCTGTGACAAGCGTGATTTGTTGGCCCTGAAGGAATTTGCAGGCAACCTTACAAATGGCATCACAGGGTGGTCAAATGATGTTGTCTGCTGCAAATGGGTTGGAGTTTTTTGTGATAATGTGAATGATGGTGATGGATCAGCTTCATGTAGAGTGACCAAGTTGATTCTCTCTGGAATGGGTCTCAATGGCACAATTTCGAACTCTTTAGCCCATCTAGATAAGCTAAATGTGCTGGATCTTTCGTCCAATCTTCTCCAAGGTGGATTGCCTTCTGAGTTCTCCAAGTTGAAACAGTTACACTTTCTTGACTTGAGTAATAATCTGCTGTCAGGACCAGTTGCTGGGGCAATTTCTGGTTTGCAATCCATTCAGATACTGAATCTTTCAAGCAATTTACTTGATGAAGACCTCTTCCAGTTTGGGGGATTCCAACATCTTGTTGCTCTCAACATAAGCAACAATTCATTCACTGGTCAGGTCAATTCTCAAATTTGCAGCTCTTCCAAAGGACTTCATGTTATTGATTTATCCATAAATCATTTTTCTGGTGGTCTTGAATGGTTAGACAGCTGTAGCACATCACTCCAACAGGTTTATTTGGATTCCAATTCATTTTCTGGCCCTCTTCCTGATTCCTTGTATTCAATGTCAGCCCTGGAGCAACTCTCAATCCCTATGAACAAATTCTCTGGCCAGTTAAACAAGCAATTGAGTAAGCTCTCTAACCTGAAGTTTTTAATAATGTATGGAAACCAGTTCTCAGGGGAACTCCCAAATGTATTTGGGAATCTTTTGCACCTAAAACAATTTGTAGCACACTCCAATTCATTTTCTGGACCATTGCCTTCCACCTTGGCCTTATGCTCAAAACTTCAGGTGCTTAACCTTCAAAATAATTCTTTGGAAGGTTCTGTTGATCTTAATTTCACTGGCTTGTCTAATCTTTTCTCGTTGGACCTTGCTAGTAATCATTTAAATGGATCCCTTCCAACTTCCTTGTCCTATTGTCATGAATTGACATTGTTAAGCCTTGCCAAGAACAAGTTAACTGGCCAAATCCCTGAGAACTATGCAAACCTCACTTCACTTGTGATTCTGTCCTTGTCAAATAACAGCTTAGAGAACTTACCTGGGGCGCTTTATGTACTGCGGCAGTGCAAAAAACTCACATTTCTCATCCTCTCAAAGAATTTCCATGGTGAGGAAATTCCAGAAAGTTTAATAGCAGGGTTTGAGAGCCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATGTTCCTGCTTGGATATGGGATTGCACAAGTTTGGAAGTCCTTGATTTGTCATGGAACAGTTTGGAAGGTAGTATCCCATCTTGGATTGGTAGGATGGACAATTTGTTCTACTTGGATTTGTCAAATAATTCTCTCACAGGAGAAATACCAAAAGGTTTGACAGAGTTGGGGAGCCTCACATCCCCAAATAGAATATCAAGTCTGGCTGCTTCTTCTGCCATTCCTCTCTATATTAAGAGAAACAAGAGTGTTAATGGGCTGAAATATAGCCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACCAATTAAGTGGAATAATATGGCCTGAAATTGGTTGTTTAAAAGCACTTCATATCTTAGATTTAAGCAAGAACAAGATCACTGGTACCATTCCCGACACTATTTCAGAGATGGAGAATTTGGAAATATTAGATTTATCTCATAATGACCTCTTTGGAACAATCCCTCCATCATTTAACAACCTCACATTCTTGTCAAGGTTCAGTGTGGCATATAATCACTTGCATGGACCAATTCCAGTTGGGGGCCAATTTTTAAGCTTCCCTAATTCAAGTTTTGAGGGCAACCCAGGGCTTTGTGGGAGAATAGTAATAGATTCTCCTTGCAAAAGTGTAAAAAATATGGGCCTGGGGCCAAACATTGCTCCTTATTCTTCTTCTAGAAAATTTGGTAAAAGCAATGTCCTCTGCATAACAATTAGTGTAGGTGTAGGCCTTGCACTGTTTCTTGCAATTGTTCTGCTAAGAATGTCAAAGAGGGATGGGGATAAGCCAATTGATAACCTTGATGAGGAGCACAGCTGGCCAAACAGGTTACCTGAAGCACCTGTTTCTTCAAAATTGGTACTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGCAGATTTGTTTAAATCCACAAACAATTTCAACCAAGAAAATATAATTGGTTGTGGCGGGTTTGGTCTTGTCTACAAGGCAAATCTTCCAAATGGCACAAAAGCAGCTATCAAGAAACTTTCAGGGTTTTGTGGTCAAGTTGAACGTGAATTCCAAGCTGAAGTAGAGGCACTCTCAAGAGCTCAGCACAAGAACCTTGTTTCTCTCAAAGGCTATTGTCAGCATATCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGATTATTGGCTGCATGAGAGTGTGGATGGAAATTCAGCTCTAAAATGGGATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGATTAGCTTACTTGCACACAGTGTGCGATCCACATATCGTGCATCGAGATATTAAATCTAGCAACATACTTCTGGATGATAAATTTGAAGCTTATTTGGCTGATTTTGGTCTCTCAAGGCTTCTTCAACCCTGTGATACTCATGTTACAACAGATTTAGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAGGGTGATATTTATAGTTTTGGTGTTGTTCTTGTTGAGCTTCTTACTAGTAAAAGGCCTGTAGAAGTCATCATGGGGCAACGTTGTAGGAATCTGGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCAGCCATTTGGCACAAGGATAATGAGAAGCAACTTTTGGAGGTACTTGCTATTGCTTGTAAATGTCTAGATGAAGATCCAAGGCAAAGACCCCATATTGAATTAGTTGTTCAATGGCTTGATGGCTCTCAAGAATCATCTTAG 3159 0.4027 MVLQRRHSMTFVQRGFLACFICFSVGLETPAPSCDKRDLLALKEFAGNLTNGITGWSNDVVCCKWVGVFCDNVNDGDGSASCRVTKLILSGMGLNGTISNSLAHLDKLNVLDLSSNLLQGGLPSEFSKLKQLHFLDLSNNLLSGPVAGAISGLQSIQILNLSSNLLDEDLFQFGGFQHLVALNISNNSFTGQVNSQICSSSKGLHVIDLSINHFSGGLEWLDSCSTSLQQVYLDSNSFSGPLPDSLYSMSALEQLSIPMNKFSGQLNKQLSKLSNLKFLIMYGNQFSGELPNVFGNLLHLKQFVAHSNSFSGPLPSTLALCSKLQVLNLQNNSLEGSVDLNFTGLSNLFSLDLASNHLNGSLPTSLSYCHELTLLSLAKNKLTGQIPENYANLTSLVILSLSNNSLENLPGALYVLRQCKKLTFLILSKNFHGEEIPESLIAGFESLMVLALGNCGLKGHVPAWIWDCTSLEVLDLSWNSLEGSIPSWIGRMDNLFYLDLSNNSLTGEIPKGLTELGSLTSPNRISSLAASSAIPLYIKRNKSVNGLKYSHASSFPPSIYLSNNQLSGIIWPEIGCLKALHILDLSKNKITGTIPDTISEMENLEILDLSHNDLFGTIPPSFNNLTFLSRFSVAYNHLHGPIPVGGQFLSFPNSSFEGNPGLCGRIVIDSPCKSVKNMGLGPNIAPYSSSRKFGKSNVLCITISVGVGLALFLAIVLLRMSKRDGDKPIDNLDEEHSWPNRLPEAPVSSKLVLFQNSDCKDLTVADLFKSTNNFNQENIIGCGGFGLVYKANLPNGTKAAIKKLSGFCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHINDRLLIYSYLENGSLDYWLHESVDGNSALKWDVRLKIAQGAAHGLAYLHTVCDPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPCDTHVTTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTSKRPVEVIMGQRCRNLVSWVFQMKSENREQEIFDSAIWHKDNEKQLLEVLAIACKCLDEDPRQRPHIELVVQWLDGSQESS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00008 1052 PRINTS Leucine-rich repeat signature 601 614 - -
Sebi5g00008 1052 PRINTS Leucine-rich repeat signature 495 508 - -
Sebi5g00008 1052 SMART LRR_sd22_2 345 371 - -
Sebi5g00008 1052 SMART LRR_sd22_2 129 155 - -
Sebi5g00008 1052 SMART LRR_sd22_2 393 411 - -
Sebi5g00008 1052 SMART LRR_sd22_2 601 627 - -
Sebi5g00008 1052 SMART LRR_sd22_2 577 600 - -
Sebi5g00008 1052 SMART LRR_sd22_2 492 515 - -
Sebi5g00008 1052 SUPERFAMILY Protein kinase-like (PK-like) 755 1045 IPR011009 -
Sebi5g00008 1052 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 338 - -
Sebi5g00008 1052 SMART serkin_6 774 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00008 1052 Gene3D Ribonuclease Inhibitor 368 678 IPR032675 -
Sebi5g00008 1052 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 740 849 - -
Sebi5g00008 1052 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 294 1047 - -
Sebi5g00008 1052 CDD STKc_IRAK 780 1047 - -
Sebi5g00008 1052 Gene3D Ribonuclease Inhibitor 33 261 IPR032675 -
Sebi5g00008 1052 Pfam Protein kinase domain 775 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00008 1052 ProSiteProfiles Protein kinase domain profile. 774 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi5g00008 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Sebi5g00008 1052 Gene3D Phosphorylase Kinase; domain 1 740 849 - -
Sebi5g00008 1052 Pfam Leucine rich repeat 558 614 IPR001611 GO:0005515
Sebi5g00008 1052 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Sebi5g00008 1052 Gene3D Transferase(Phosphotransferase) domain 1 850 1051 - -
Sebi5g00008 1052 SMART LRR_typ_2 105 128 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 273 296 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 393 416 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 601 624 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 492 516 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 577 600 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 345 369 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 129 152 IPR003591 -
Sebi5g00008 1052 SMART LRR_typ_2 153 178 IPR003591 -
Sebi5g00008 1052 FunFam Leucine-rich repeat receptor-like protein kinase 850 1052 - -
Sebi5g00008 1052 SUPERFAMILY L domain-like 558 678 - -
Sebi5g00008 1052 FunFam Leucine-rich repeat receptor-like kinase 37 157 - -
Sebi5g00008 1052 SUPERFAMILY RNI-like 226 520 - -
Sebi5g00008 1052 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Sebi5g00008 1052 SUPERFAMILY L domain-like 56 292 - -
Sebi5g00008 1052 Pfam Leucine Rich Repeat 470 489 IPR001611 GO:0005515
Sebi5g00008 1052 Gene3D Ribonuclease Inhibitor 262 365 IPR032675 -
Sebi5g00008 1052 ProSitePatterns Protein kinases ATP-binding region signature. 780 803 IPR017441 GO:0005524
Sebi5g00008 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00008 Sebi-Chr5 176482 179640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00008 40 363 Receptor kinase-like Gene Family AT1G55610 23.939 6.38e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi5g00008 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00008 - - gmx:100789534 1585.85