Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00007 ATGTCTCCTTGTTCAGTTGGCACTTGCATCGAGGATGATCTTGGTACCACGAGTGGTCACTCACTTTATGATGATACCATTGGGAATGACCTGCTCTCCACCTTCTTCAATATGGATAAACCAAACCCATCCTCTGGTGCTCCTACATCTACTGCAGATAACTTTGTTGTTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGACGTTGGGTGCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAACCCTGACATATTGGTATCTGCTTCTGAAATTGGCTCTACTATGAACTCAAGAGAAGCAATGTCTTCTTTTTCTATTGGTACTTGCATCAACGATGATCTTGGCACCATGGATAGTCACTCACTCTCCAGTGGCACCATTGATGAACACTTGCGCTCCACCTACCTCAATATGGATAAAATAAACCCATCTTCTGGTGCCCTTGCATCTGCTGTAGATAACTTTTCTATTTCTATTGGTACTACCAATATGAATGAAAGGCTTGACGTTGGGTCCCGAGATAGCCAGTTTATGAATGGTTCAACATCCATAATCAAACCGGACATGCTGGTCTCTGCTTTTGAAAATGGCTATACTATTAACTCAAAACAAACAACGTCTGCTTTTTCTATTGGTACTTGGATCGATGATGATCTTGGTACCATGGATGGTCACTCACTCTATGATGATACCACTAACAAGGACATGCTCTCCACTTACCTCAATATAGATAAACTAAACCCATCCTCTTGTGATCCTGCATCTACTGCAGACAACTTTGCTATTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGGCGTTGGGTCCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAAACCTGACATGTTGGTCTCTGCTTCTGAAAATGGATCTACTATTAACTCAAGAAAAGCAAAGTCTGCTACTGAGATTGCGGAGCTTGCCTTGGTTGACCCCAAGCGTGCTAAAAGGATTTTGGCAAATAGACAGTCTGCTATAAGATCAAAGGAAAAGCAGGCGCATTACATTTCAGAGCTTGAAAAGAAGGTGCAAACATTGGAAACTGAAAAGGCATCCCTATCTACACAGTTAACTATCTCGCAAAGGGATACTCAAAGAAAGTATGATGAGAATAATGAGTTAGGGTTGGGGTTGCAAACACTGATACAACTTCAATTGGATGACGGTGAGTTCATGCTGCTATAA 1236 0.4142 MSPCSVGTCIEDDLGTTSGHSLYDDTIGNDLLSTFFNMDKPNPSSGAPTSTADNFVVASGTTNINERLDVGCQHSQFMNGSTSIINPDILVSASEIGSTMNSREAMSSFSIGTCINDDLGTMDSHSLSSGTIDEHLRSTYLNMDKINPSSGALASAVDNFSISIGTTNMNERLDVGSRDSQFMNGSTSIIKPDMLVSAFENGYTINSKQTTSAFSIGTWIDDDLGTMDGHSLYDDTTNKDMLSTYLNIDKLNPSSCDPASTADNFAIASGTTNINERLGVGSQHSQFMNGSTSIIKPDMLVSASENGSTINSRKAKSATEIAELALVDPKRAKRILANRQSAIRSKEKQAHYISELEKKVQTLETEKASLSTQLTISQRDTQRKYDENNELGLGLQTLIQLQLDDGEFMLL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00007 411 Coils Coil 346 373 - -
Sebi5g00007 411 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 103 405 - -
Sebi5g00007 411 Gene3D - 329 384 - -
Sebi5g00007 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 328 391 IPR004827 GO:0003700|GO:0006355
Sebi5g00007 411 SUPERFAMILY Leucine zipper domain 330 381 IPR046347 GO:0003700|GO:0006355
Sebi5g00007 411 CDD bZIP_plant_RF2 331 382 IPR044759 GO:0003700|GO:0006355
Sebi5g00007 411 Pfam bZIP transcription factor 330 378 IPR004827 GO:0003700|GO:0006355
Sebi5g00007 411 SMART brlzneu 326 390 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00007 Sebi-Chr5 141511 143092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00007 220 406 bZIP Transcription Factor Family AT1G06070 49.020 8.17e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi5g00007 bZIP_1 7.1e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00007 - - gmx:100786738 164.851