Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi59g00010 ATGAGAAAAAACCATAAGTCATCGGGAACTGGGTTTGTCGATATGAAGCCCACTTTGGCTCAGGCTCAGAGTACTTGGGAAGCTGATAAAATGCTTGATGTTTACATTCATGATTATTTTATGAAAAGAAAATTACATACTGCTGCAAAAGCTTTTATGACAGAAGGAAAAGTTTCCACCGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAGCATTCTGAGGCTGCTTCAGCTTACATTGAGACCCAGCAAGTGAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGGAATGCACAGTTACAGCGCAGAGATCCTAATCATCCCGCACTTGGTGGTTCTTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCGATGAAAATGTATGATGAACGAATAAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCAAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCACGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAAATTCAGGCCAGGACTCCTTTGGCCACTGACATAAAAGGAGAAGTTAACTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTCTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACTAGTCTTCCATTAAAGGGCTGGCCTCTAACTGGAATTGATCAACTGAGACCTAATTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATTTCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAGGCACAGAACAACCTTGGGAATTCTAATTATGGTGATATGGATCCACGAAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATGCAGTCAGGTTCACCTAAGATGAAGATGGCTCAGTCGCAACATTCACTATCTCAACAGCAGGAGCAATTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTTCTTCTGGAGCTGCTAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCACCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGTAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGTCTTGCTTCATCTTCAAATTTGCTGGATGACATGGAACGATTTGGAGATGTTGGTGCTTTAGAAGATAATGTGGAATCCTTCCTATCAAATGATGGAGGAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTTACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCACAGTCACTTGCTGTCACTTTTCTTCAGATGGAAAATTGCTTGCCAGTGCTGGGGATGACATGAAGGTTGTCCTCTGGAACATGGACACTTTAAAGACAGAGAGCACTCCTGAAGAACACAAATCAGTTATTTCAGATGTCCGTTTTAGACCAAATTCGACTCAGTTGGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCATTTGTGTGCAAGAATATAGTGGGCACAGTTCAGCTATTCTTTCCCTTGATTTCCACCCCAAGAAGACTGATATTTTCTGCTTCTGTGATAGTGATAATGAAATTCGGTATTGGAACATTAGTTCTCCCTCCTGCATCCGCACATTTAAGGGAGGTAATTCAAAAGTGAGATTTCAGCCTAGACTGGGACATGTACTAGCAGCGGCTTCAGATAATGTAGTGTCAATTTTTGATGTCGAAGCTGACAGACAGATTTATTCACTCCAGGGTCATCCTGAACCGGTGAACTATATTTGCTGGGATGCGAGTGGAGATGTCTTGGCATCTGTGAGTCCAAGTTTGGTGAAGATCTGGTCTTTGGGCTCAGGAGATTGCATTCAGGAGCTCAGCTCCACTGGGAGCCCATTTTATTCCTGTGTTTTTCATCCGTGTTATTCAACTTTATTGGTGATAGGAGGACATTCGTCCTTAGATCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACATGAGAATATAATATCTGCTTTGGCTCAGTCTCCTATGACTGGAATGGTTGCCTCTGCAAGTCATGATAACTCTGTAAAATTGTGGAAATAA 2388 0.4276 MRKNHKSSGTGFVDMKPTLAQAQSTWEADKMLDVYIHDYFMKRKLHTAAKAFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAASAYIETQQVKAREQLQMQQLQLMQQRNAQLQRRDPNHPALGGSLNAMNSEGMLGQPPASVLAMKMYDERIKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQIQARTPLATDIKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPNLGVQVQKPNLTTQNQFLLASQQQQVLAQAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSTRNDGSICSQMQSGSPKMKMAQSQHSLSQQQEQLQQNNRKRKQHSSSGAANSTGTGNTAGPSPNSPPSTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLDDMERFGDVGALEDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFGCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLKTESTPEEHKSVISDVRFRPNSTQLATASFDKSVRLWDAANPSICVQEYSGHSSAILSLDFHPKKTDIFCFCDSDNEIRYWNISSPSCIRTFKGGNSKVRFQPRLGHVLAAASDNVVSIFDVEADRQIYSLQGHPEPVNYICWDASGDVLASVSPSLVKIWSLGSGDCIQELSSTGSPFYSCVFHPCYSTLLVIGGHSSLDLWNMAENKSMTIPAHENIISALAQSPMTGMVASASHDNSVKLWK 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 635 - -
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 514 549 - -
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 763 795 - -
Sebi59g00010 795 Pfam LisH 30 56 IPR006594 GO:0005515
Sebi59g00010 795 Coils Coil 367 387 - -
Sebi59g00010 795 Gene3D - 512 648 IPR015943 GO:0005515
Sebi59g00010 795 PRINTS G protein beta WD-40 repeat signature 575 589 IPR020472 -
Sebi59g00010 795 PRINTS G protein beta WD-40 repeat signature 533 547 IPR020472 -
Sebi59g00010 795 PRINTS G protein beta WD-40 repeat signature 782 795 IPR020472 -
Sebi59g00010 795 MobiDBLite consensus disorder prediction 318 427 - -
Sebi59g00010 795 Coils Coil 108 128 - -
Sebi59g00010 795 CDD WD40 521 795 - -
Sebi59g00010 795 SMART WD40_4 592 632 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 507 546 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 756 795 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 715 754 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 635 671 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 674 712 IPR001680 GO:0005515
Sebi59g00010 795 SMART WD40_4 549 588 IPR001680 GO:0005515
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 556 588 - -
Sebi59g00010 795 ProSiteProfiles LIS1 homology (LisH) motif profile. 28 60 IPR006594 GO:0005515
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 588 IPR001680 GO:0005515
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 641 IPR001680 GO:0005515
Sebi59g00010 795 Gene3D - 649 795 IPR015943 GO:0005515
Sebi59g00010 795 MobiDBLite consensus disorder prediction 340 427 - -
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 555 IPR001680 GO:0005515
Sebi59g00010 795 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 15 795 IPR044716 GO:0003714
Sebi59g00010 795 SUPERFAMILY WD40 repeat-like 512 795 IPR036322 GO:0005515
Sebi59g00010 795 Pfam WD domain, G-beta repeat 760 795 IPR001680 GO:0005515
Sebi59g00010 795 Pfam WD domain, G-beta repeat 555 588 IPR001680 GO:0005515
Sebi59g00010 795 Pfam WD domain, G-beta repeat 677 712 IPR001680 GO:0005515
Sebi59g00010 795 Pfam WD domain, G-beta repeat 519 546 IPR001680 GO:0005515
Sebi59g00010 795 Pfam WD domain, G-beta repeat 595 632 IPR001680 GO:0005515
Sebi59g00010 795 ProSitePatterns Trp-Asp (WD) repeats signature. 533 547 IPR019775 -
Sebi59g00010 795 ProSiteProfiles Trp-Asp (WD) repeats profile. 763 795 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi59g00010 Sebi-Chr59 501398 510263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi59g00010 596 794 Miscellaneous Gene Families AT5G08390 24.510 5.36e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sebi59g00010 WD40 0.0083 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi59g00010 - - gmx:100786946 1227.23